Query= MSMg01no535_k13.b1 MSMg01no535_k13.b1 CHROMAT_FILE:
MSMg01no535_k13.b1 PHD_FILE: MSMg01no535_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:32 2005
(576 letters)
>mm_chr5_14213790_14214765
Length = 976
Score = 1060 bits (548), Expect = 0.0
Identities = 566/572 (98%)
Strand = Plus / Minus
Query: 5 gaattctttcactttcttagtaataatattcagttttacttcagagattcctaagtaaag 64
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 847 gaattctttcactttcttagtaataatattcagttttactccagagattcctaagtaaag 788
Query: 65 agaattacttaactaaaattaaacttgtatctaaagttaagacataaacaagcatattgg 124
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 aggattacttaactaaaattaaacttgtatctaaagttaagacataaacaagcatattgg 728
Query: 125 tacacacctttattctcataacttgaaagggagagacacaaatggatgtatgtgagttta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tacacacctttattctcataacttgaaagggagagacacaaatggatgtatgtgagttta 668
Query: 185 agacatgtatagtctacatactgggttgcaggctggccaggctacatagtgagactccag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 agacatgtatagtctacatactgggttgcaggctggccaggctacatagtgagactccag 608
Query: 245 ttcaaaacttttaaaaatgctatataatattcattgttttggaagaatgcttgggttgaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ttcaaaacttttaaaaatgctatataatattcattgttttggaagaatgcttgggttgaa 548
Query: 305 gagtggaagcacagaatagaggagaggacatggagaggagtaaaccacattatagaccac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gagtggaagcacagaatagaggagaggacatggagaggagtaaaccacattatagaccac 488
Query: 365 ttgaagaagtcagatagaagcatactcctagaggagcttccatccatgtatgggacatat 424
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 487 ttgaagaagtcagatagaagcatactcctagaggagcttccacccatgtatgggacatat 428
Query: 425 gcacatttgaattcacagtggttatgagagtatgcacagggcctgtgtgaactcaacgag 484
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gcacatttgaattcacagtgattatgagagtatgcacagggcctgtgtgaactcaacgag 368
Query: 485 acaaaattccaacatggagagggcaggtggacaaagagtcccacgtctagaggaggaggt 544
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 367 acaaaattccaacatggagagggcaggtggacaaggagtcccatgtctagaggaggaggt 308
Query: 545 atgagcaattgattccttgccagttgaaaacc 576
||||||||||||||||||||||||||||||||
Sbjct: 307 atgagcaattgattccttgccagttgaaaacc 276
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_k13.g1 MSMg01no535_k13.g1 CHROMAT_FILE:
MSMg01no535_k13.g1 PHD_FILE: MSMg01no535_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:32 2005
(531 letters)
>mm_chr5_14049454_14050385
Length = 932
Score = 990 bits (512), Expect = 0.0
Identities = 527/532 (99%), Gaps = 1/532 (0%)
Strand = Plus / Plus
Query: 1 tctttaagctacgttaagttaaacgaacagacttttagactttgtttctgtcatccttgg 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttaagcaacgttaagttaaacgaacagacttttagactttgtttctgtcatccttgg 260
Query: 61 aaccactgattttatgtttaagaaattcttgcacaaatttaactgcttggtgttaggact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccactgattttatgtttaagaaattcttgcacaaatttaactgcttggtgttaggact 320
Query: 121 aaaaatttttgttctaaatagttgaaatagggactgtagatgacaaaaaataattaacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaatttttgttctaaatagttgaaatagggactgtagatgacaaaaaataattaacat 380
Query: 181 agaaaactactggtattcttaatgcaaaagcattgctaatcgtattcgtccgattatttt 240
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 381 agaaaactactggtattcttaatgcaaaagcattgctaatcgtattcatctgattatttt 440
Query: 241 tagacctgaatgcttgttctcatgttactgtaagcctgttatctatgcagatggtaaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagacctgaatgcttgttctcatgttactgtaagcctgttatctatgcagatggtaaata 500
Query: 301 gggctcttgttggttcagtgttgggtgaaatgagtaaagaaagagtactttataaaacgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggctcttgttggttcagtgttgggtgaaatgagtaaagaaagagtactttataaaacgg 560
Query: 361 taacccgttcatattgtattgtggttttacagtggttttcttaaaacagtgcattattgt 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaccggttcatattgtattgtggttttacagtggttttcttaaaacagtgcattattgt 620
Query: 421 taggcttgtggttagctttcataaagtttcattcagaaaggagaattgatcattctttcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taggcttgtggttagctttcataaagtttcattcagaaaggagaattgatcattctttcc 680
Query: 481 tatgtattatttctgtatatcattagttatttt-cctttatgttattttctt 531
||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 681 tatgtattatttctgtatatcattagttatttttcctttatgttattttctt 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 932
Length adjustment: 10
Effective length of query: 521
Effective length of database: 922
Effective search space: 480362
Effective search space used: 480362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
