NNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTATCGCTTTTGGAGCCCGTATTTGTCTATCTTTCTATAT
CTGTCTGAGTCAGATGTTGTGTGGAGCTTAAGGACAAAATAGTCCTGTAT
GCTGTATCAGAAGATGGCCTCGTCAGCCATCATTGGGAAGAGAGGCCCCT
TGGTCTAGCAAACTTTATATGCCCCAGTACAGGGGAAACACCAGGGCCAA
GTAGTGGGAGTGGGTGGGTAGGGGAGCAGGGGGGCTGTTATAGGGGATTT
TCAGGTTAGTATTTGAAATGTAAATGAAGCAAGTACCTAATAAAAAATTG
GGAAAAAATAGTCCTGTATGCAAGCATAACAGAGTATCAGTAATAGTGTT
AGGAATTGGTGCTTGCCCATGAGGTGTATCTCAATTTGGTCCAGTTATTA
GTTAGTTGAAAATTCCCTCAGTCTCGGATCCAAACCTCTTGCCTTCATTT
CTTGTAGACAGAATAAATTTGGGGTTGAAAGTTTTGTGGGTGGGTTTGTG
TCTCTGCCACTCCACTGGGGTTCCTGCCTGGCTACAGAAGGTGGTCTGTT
TGGGTTCCATATCCCCAATGTAGAGAGTCACAGCTAAAGTTACTCTCATT
GATTCTTGGGCGCCTCCCTTATGCTAGGTCTCTGTCCTGGAGGAGTCCCC
CATTTCCTCACCCCTAACAGTTACAGATTCCCATTCATTTTCATGGCTAT
TCAGTCATTTTTC

NNCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACATATATATGTATATATACATA
TAATAAATAAGCATAGAATATACATTAACTATTGTTTTAGAAATCAGAAA
GCATTGGTTTGATTACTTTAAGTGTTTTAAATAAAGTACGATTTTGCTAT
AATAATCATATAAATGTATTTTAATGAATTATTAAACCTATACTTATAAC
ATCCTTTTGAAATTGCAGTATTTAAATTTACAATATACAAAAGAATGTCA
TACTCGGAAGCAAAACTAATACCAAGATACATGTTTTACATTATATAATA
TAATAATTAGAAATTGTTGAGTACAAATGAATTATAACTTTGTTGAGAGT
CTATATTTGTACATCTGTATGGGGTATGTCATGATGGTTTGATTCATTTA
TACGCTATGTAATAATCAAATTAGGATAAATAGCACCTCCATATGTTAAA
GAATTAATTGCTTTTGTGTGTTAAAAATATACAGTACTTTTACTTAATAA
ATAATAACAGTATTACCTAGTTTACAAAATACTTGTTTAAACAAGTTGAT
GAGAAGAATTGAAGAATCAAGTATTCAAATATACAAACCTATCAAAGCAA
TTGTAGTTAAAAACCACCCCAAAAGCTATGTGTAATGCCTCTAAGCCACC
ATAATGATCACTTTGGCAAGATGTATCTAAATGCCCAATAAGAAAACTCA
CCTACTAGTAGAAATTTGCCACCATCTAAA

Query= MSMg01no535_k23.g1 MSMg01no535_k23.g1 CHROMAT_FILE:
MSMg01no535_k23.g1 PHD_FILE: MSMg01no535_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:34 2005
         (609 letters)



>mm_chr5_80824670_80825678
          Length = 1009

 Score = 1093 bits (565), Expect = 0.0
 Identities = 571/573 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatatatatgtatatatacatataataaataagcatagaatatacattaactattgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 acatatatatgtatatatacatataataaataagcatagaatatacattaactattgttt 514

                                                                       
Query: 61  tagaaatcagaaagcattggtttgattactttaagtgttttaaataaagtacgattttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tagaaatcagaaagcattggtttgattactttaagtgttttaaataaagtacgattttgc 454

                                                                       
Query: 121 tataataatcatataaatgtattttaatgaattattaaacctatacttataacatccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tataataatcatataaatgtattttaatgaattattaaacctatacttataacatccttt 394

                                                                       
Query: 181 tgaaattgcagtatttaaatttacaatatacaaaagaatgtcatactcggaagcaaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgaaattgcagtatttaaatttacaatatacaaaagaatgtcatactcggaagcaaaact 334

                                                                       
Query: 241 aataccaagatacatgttttacattatataatataataattagaaattgttgagtacaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aataccaagatacatgttttacattatataatataataattagaaattgttgagtacaaa 274

                                                                       
Query: 301 tgaattataactttgttgagagtctatatttgtacatctgtatggggtatgtcatgatgg 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tgaattagaactttgttgagagtctatatttgtacatctgtatggggtatgtcatgatgg 214

                                                                       
Query: 361 tttgattcatttatacgctatgtaataatcaaattaggataaatagcacctccatatgtt 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 213 tttgattcatttatacgctatgtaataatcaaattaggataattagcacctccatatgtt 154

                                                                       
Query: 421 aaagaattaattgcttttgtgtgttaaaaatatacagtacttttacttaataaataataa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 aaagaattaattgcttttgtgtgttaaaaatatacagtacttttacttaataaataataa 94

                                                                       
Query: 481 cagtattacctagtttacaaaatacttgtttaaacaagttgatgagaagaattgaagaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  cagtattacctagtttacaaaatacttgtttaaacaagttgatgagaagaattgaagaat 34

                                            
Query: 541 caagtattcaaatatacaaacctatcaaagcaa 573
           |||||||||||||||||||||||||||||||||
Sbjct: 33  caagtattcaaatatacaaacctatcaaagcaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)