Query= MSMg01no535_p19.b1 MSMg01no535_p19.b1 CHROMAT_FILE:
MSMg01no535_p19.b1 PHD_FILE: MSMg01no535_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:58 2005
(580 letters)
>mm_chr5_24670797_24671776
Length = 980
Score = 862 bits (446), Expect = 0.0
Identities = 473/482 (98%), Gaps = 2/482 (0%)
Strand = Plus / Minus
Query: 5 gaattcacagcaattgattcacaacctataatattcattatcacatttattaaaagtaac 64
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 481 gaattcacagcaattgattcacaacctatactattcattatcacatttattaaaagtaac 422
Query: 65 tgatgtgttttacttcactgatggcccacaagagggagatctagaataactcagtagtca 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgatgtgttttatttcactgatggcccacaagagggagatctagaataactcagtagtca 362
Query: 125 agtacccaacgagtacagcaccctgtgatgctgtaggaggtctgaatgtcagaaccacca 184
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agtacccaacaagtacagcaccctgtgatgctgtaggaggtctgaatgtcagaaccacca 302
Query: 185 accacagccctctggtgtgaaagcctcttctcttactacaaattccagaactgatcacag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 accacagccctctggtgtgaaagcctcttctcttactacaaattccagaactgatcacag 242
Query: 245 agcctgtgacaaactgaaagaattttagtccagtttaggactaaagatgaattttgttcg 304
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 241 agcctgtgacaaactgaaagaattttagtccagtttaggactaaagatgaatcttgtttg 182
Query: 305 gtggagtgcttgtctaacatgcacaaagctttgagttcaatcctcagcactggatgaaga 364
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 181 gtggagtgcttgtctaacatgcacaaagctttgagttcaatccccagcactggatgaaga 122
Query: 365 ggacacatagggcatagctgtgaccccacctctcaaaagacagaaatag-atcatcagag 423
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 121 ggacacatagggcatagctgtgaccccacctct-aaaagacagaaataggatcatcagag 63
Query: 424 ttcaaggccattcttagctacatagccagccagggatacatcagattctgtttcaggagg 483
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 62 ttcaaggccattcttagctacatagccagccagggatacatcagattctatttcaggagg 3
Query: 484 ag 485
||
Sbjct: 2 ag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_p19.g1 MSMg01no535_p19.g1 CHROMAT_FILE:
MSMg01no535_p19.g1 PHD_FILE: MSMg01no535_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:58 2005
(543 letters)
>mm_chr5_24456369_24457309
Length = 941
Score = 988 bits (511), Expect = 0.0
Identities = 524/529 (99%), Gaps = 2/529 (0%)
Strand = Plus / Plus
Query: 1 tacaggtgtgtattaatgtattttgaaatttaccctgcctgtccattattcttttatgag 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacaggtgtgtattagtgtattttgaaatttaccctgcctgtccattattcttttatgag 260
Query: 61 cagttggccagccgtgtgtgtaagcacatgcccaccctgccctagttctccctctagctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagttggccagccgtgtgtgtaagcacatgcccaccctgccctagttctccctctagctc 320
Query: 121 tgtgcagcttctaccagagctagagatagggccttgtcatcctgagcagactgctgccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgcagcttctaccagagctagagatagggccttgtcatcctgagcagactgctgccta 380
Query: 181 cagagtaaggctccctccctttctctctgtttccacatctgtctgtctgtccatctttgc 240
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 cagagtaaggctccctccctttctct--gtttccacatctgtctgtctgtccatctttgc 438
Query: 241 aagaagctctctactcacaccattctcctagaggaggcccagtcaccgttgggtgaatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aagaagctctctactcacaccattctcctagaggaggcccagtcaccgttgggtgaatga 498
Query: 301 cctcactgacagggaacacacaacctgctggttctttggttggcccaatgatcatcacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cctcactgacagggaacacacaacctgctggttctttggttggcccaatgatcatcacca 558
Query: 361 cagtgcaaaccgctggaagaaaacaaaggcagcttgctcaagagggtgcacaaaggcaca 420
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 559 cagtgcaaactgctggaagaaaacaaaggcagcttgctcaagaggatgcacaaaggcaca 618
Query: 421 aaccatcaacttctcccataagcctgattgcgtgtaggtggtttgtgtatcggaggccag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaccatcaacttctcccataagcctgattgcgtgtaggtggtttgtgtatcggaggccag 678
Query: 481 gagaggaggctggaggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 529
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gagaggaggctggaggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 941
Length adjustment: 10
Effective length of query: 533
Effective length of database: 931
Effective search space: 496223
Effective search space used: 496223
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
