NTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTATAGAGGAAACTCAAGTGGCTGAAAAACTTTTAAAGAAA
TGTTTAACATCCTTATCCAGCAGGGAAATGCAAAGCAAAACTACTTTGAG
ATTCCATCTTACACCTGACAGAAGAGCTAAGATCAATAACAGAAGCGACA
GCTCATGCTGGTAAGGATGCAGAGCAAGAGGACCACTCCTCCATTACATA
AGCAAACTTACATAGCTAATGGAGACATCAATAGTGATTCCTCATAAAGT
TGGGAATGCATCTACCTCAAGAACCATCTAAACCACTCCTGGGCATGTAC
CCAAAGGATACTCCATCCTACCCCAAAATCACTTACTCAGCCATGCTCAC
TGCAGCTTTATTCATAGTCGCCAGAAACTGGAAACAGCCTAGGTGCTCAA
CAGAAGAATGGATGTTTTTAAATGTGGTAAATCTATATAATGGAATATTA
CTTGGCTATTTTTTAAATGGCATCATGAAATTTGCTACAAATGAATGGAA
CTAGAAAAAATCATCCTGAAATAAACCAGACCCAGAAAGAAAGACAAAGG
TGATACGTATTTGCTTGTAAGTGGATATTTGCCACTAAGTAAATGATAAT
CAAGCTACAATCCATAGTCCCAGAGTAGTTAGGTAAAGAGGTGGGGGTCT
ATGGATCTCCTTGAGAGAGGAAATACAACAGGTTTAAATGCGGACTCTGG
GTGAGTGAGGACAGGAGTTGGGTGGTGGGGTACAGGAGTTAGG

NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGTTTAGGGTTTTTCTTGTAGTA
AGAAGTTAGTTTTGAGGAAAAGTTAATGATCTGACTTGTATTTTAGAAGA
GATAATAATTCTTGATCTACTTTGGACTTAAAATGTTTTGTAACCCTGAT
TTTTAGAAGATTTAATGTACTCTCTTGGAAGATGGAGTTTGGCGTGGGCA
GGCAGGAATGTCAGGATGTGAGAAGCCTTGGGGCATGGGTGGAAAAGATA
GTAGGAAATGGGTCTGAATGTCCTCTGATGTGTCTGCTAGGACCTGCAGA
CTTTGCTGACCAGAAGAACTTGTTGACTTTGAATTTAAGTCAGGAGCTTG
CTATATAGCGCAAGCTGGCCTTGAACTCACTATGTAGCCAGAGTAGACTG
TGACATTGCTGTCCTTCCTCCTTGCAAATGCTGATTACAGACATGGACCA
TCATGCCCTGCTAGTGGGAAAAAAAAGTGTAAACAAGAAACATTGGGGGG
GGTGACATTTGAATTTATTTTGAGGGGACTAAAAAGCTAAATGTATTTAA
GTCTAATAAATGCTTATTNAAAGAAGAAATACATGTTATAAATGTTAGAA
AGAAATTTTCACGTTGATTTATGGTAAGTGAAGAGGGCATGTATAAATAA
TTGGGTGATTTTTCTGCGGAAGAGAAGAAGCCAAACCTGAAATTTTAAGT
GATAGAAGAGATCTCTTAACCTCAATTTAGGGAGGGAGTTACCAATTC

Query= MSMg01no536_c18.g1 MSMg01no536_c18.g1 CHROMAT_FILE:
MSMg01no536_c18.g1 PHD_FILE: MSMg01no536_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:12 2005
         (544 letters)



>mm_chr5_42231332_42232279
          Length = 948

 Score =  911 bits (471), Expect = 0.0
 Identities = 499/513 (97%), Gaps = 10/513 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgtttagggtttttcttgtagtaagaagtt----agttttgaggaaaagttaatgatc 56
           ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||
Sbjct: 512 attgtttagggtttttcttgtagtaagaagttagtgagttttgaggaaaagttaatgatc 453

                                                                       
Query: 57  tgacttgtattttagaagagataataattcttgatctactttggacttaaaatgttttgt 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tgacttgtattttagaagagataataattcttgatctactttggacttaaaatgttttgt 393

                                                                       
Query: 117 aaccctgatttttagaagatttaatgtactctcttggaagatggagtttggcgtgggcag 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 392 aaccctgatttttagaagatttaatgtactctcttggaagatggagtttggcgtgggcaa 333

                                                                       
Query: 177 gcaggaatgtcaggatgtgagaagccttggggcatgggtggaaaagatagtaggaaatgg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gcaggaatgtcaggatgtgagaagccttggggcatgggtggaaaagatagtaggaaatgg 273

                                                                       
Query: 237 gtctgaatgtcctctgatgtgtctgctaggacctgcagactttgctgaccagaagaactt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gtctgaatgtcctctgatgtgtctgctaggacctgcagactttgctgaccagaagaactt 213

                                                                       
Query: 297 gttgactttgaatttaagtcaggagcttgctatatagcgcaagctggccttgaactcact 356
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 212 gttgactttgaatttaagtcaggagcttgctatatagtgcaagctggccttgaactcact 153

                                                                       
Query: 357 atgtagccagagtagactgtgacattgctgtccttcctccttgcaaatgctgattacaga 416
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 atgtaggcagagtagactgtgacattgctgtccttcctccttgcaaatgctgattacaga 93

                                                                       
Query: 417 catggaccatcatgccctgctagtgggaaaaaaaagtgtaaacaagaaacatt-----gg 471
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||     ||
Sbjct: 92  catggaccatcatgccctgctagtggg-aaaaaaagtgtaaacaagaaacattttggggg 34

                                            
Query: 472 ggggggtgacatttgaatttattttgaggggac 504
           ||||||||| |||||||||||||||||||||||
Sbjct: 33  ggggggtgaaatttgaatttattttgaggggac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 948
Length adjustment: 10
Effective length of query: 534
Effective length of database: 938
Effective search space:   500892
Effective search space used:   500892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)