TTGGGTATAGTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCAATCTCAGAATATATCCTCTAGGGTGAAACTGTC
TATTTTAGGCTAGGGGCTTTTTTTTTTTTTTTCTGATAGGGAAACCATCA
AGAATCCCAGGGGTAACAGAAGTGTAGGGGTAATTGTAAAATGATGAATA
CTCTTCCATTTCTTCATGATTTCTGCATTTGGCCTTAGCTAAAAGACTGA
GAAGGGATCTTCTGTAGCTTCAATAATTCCTTTGTGAGTCACAATTATTG
GATACAGCAGTAAAGAGGACAAGAACACACACCCCACAAGACATGACCTT
CAGCCCGATAGAATGAGCTACTTTCATTAGTTCCACGTGGTGGAGAGAGT
ATGTCTAGATTTGGATCTGGGCCTGCAACTCACCAATCACATAATAATGG
CATTAGAAATCATGATGAAATAATGACTTACAAAATCAGCCTGCCTATCA
GTCTGAATTTCAATATTTTGAACTCTAATTTAGGTTCACCTATTTTAGTT
AACTTCCCTACATCTCAGATTCTAGTTTGGCAAAAAGGGACATAATTCAC
TGGGACTTGGTAAGAAGACTGAATGAAGCAATATACATAAGGTGCTGAGA
ACTATCTAGTGGTGAGATATATAAAGGTTCTCAGTATATTTAGCTACNAT
CATCATCACCACCATCATCAACCATTGTCACCATAGTTACCATCATGTAA
CAGGCTTGCTGGTG

NNNNNNCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCG
AATGGCAGAGAAGCACCTGAAAAAATGTTAAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATG
TCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCAC
TCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCG
GAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAAC
TGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCA
TCCTGAGTGAGGTAACACATTCTCAAAGGAACTCATACCATATGTACTCA
CTGANTAGTGGATATTAGCCCAAAACCTAGGATACCCCAGATATAAGAAC
NATTTTCCTAACACATGAAACTCATGAAAATGAAGACCTGAGTGTGGACA
TAATGCCCTTCCTATAAGGGGGACCAACACCCTTTGGAAGAGTT

Query= MSMg01no536_f21.b1 MSMg01no536_f21.b1 CHROMAT_FILE:
MSMg01no536_f21.b1 PHD_FILE: MSMg01no536_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:27 2005
         (577 letters)



>mm_chr5_4972559_4973534
          Length = 976

 Score = 1038 bits (537), Expect = 0.0
 Identities = 564/575 (98%), Gaps = 5/575 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatctcagaatatatcctctagggtgaaactgtctattttaggctaggggctt 64
           ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205 gaattccaagctcagaatatatcctctagggtgaaactgtctattttaggcaaggggctt 264

                                                                       
Query: 65  tttttttttttttctgatagggaaaccatcaagaatcccaggggtaacagaagtgtaggg 124
           ||||||||||   ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 tttttttttt---ctgatagggaaaccatcgagaatcccaggggtaacagaagtgtaggg 321

                                                                       
Query: 125 gtaattgtaaaatgatgaatactcttccatttcttcatgatttctgcatttggccttagc 184
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gtaatcgtaaaatgatgaatactcttccatttcttcatgatttctgcatttggccttagc 381

                                                                       
Query: 185 taaaagactgagaagggatcttctgtagcttcaataattcctttgtgagtcacaattatt 244
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 382 taaaagactgagaagggatctcctgtagcttcaataattcctttgtgagtcacaattatt 441

                                                                       
Query: 245 ggatacagcagtaaagaggacaagaacacacaccccacaagacatgaccttcagcccgat 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 442 ggatacagcagtaaagaggacaagaacacacaccccacaggacatgaccttcagcccgat 501

                                                                       
Query: 305 agaatgagctactttcattagttccacgtggtggagagagtatgtctagatttggatctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agaatgagctactttcattagttccacgtggtggagagagtatgtctagatttggatctg 561

                                                                       
Query: 365 ggcctgcaactcaccaatcacataataatggcattagaaatcatgatgaaataatgactt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggcctgcaactcaccaatcacataataatggcattagaaatcatgatgaaataatgactt 621

                                                                       
Query: 425 acaaaatcagcctgcctatcagtctgaatttcaatattttgaactct--aatttaggttc 482
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 622 acaaaatcagcctgcctatcagtctgaatttcaatattttgaactctgtaatttaggttc 681

                                                                       
Query: 483 acctattttagttaacttccctacatctcagattctagtttggcaaaaagggacataatt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 acctattttagttaacttccctacatctcagattctagtttggcaaaaagggacataatt 741

                                              
Query: 543 cactgggacttggtaagaagactgaatgaagcaat 577
           |||||||||||||||||||||||||||||||||||
Sbjct: 742 cactgggacttggtaagaagactgaatgaagcaat 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 976
Length adjustment: 10
Effective length of query: 567
Effective length of database: 966
Effective search space:   547722
Effective search space used:   547722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)