TTTCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGTAATGTTTCAAGAAAAAGTTTCACATAGCTTGGAGG
CTGTGGGATGGGAAGAAAGGAGAAAAGGGACATAGTGGGAGGAAAAAAAT
GTTACCAGTTAATTTTCTCAAAGGGAAAAATGTTAATAAATCATTCTTAT
TAAGCATTTGATTACAGCTAGAGTAACTATAAAGCAAAATCAAAAGTACT
CTCCACACACAGCACATCTGGGTCCTTGAGGTGGCCCAGAGAACGCCTAG
CAGCCTGAGTTCAGCGCCTGGATCCTCTCCACACCCACTCTGTGGCATGT
GTGTATGTGTGATATCCTGCATGCATACACACACATAAACAAATAATAAC
AAATGAAAATTTAATTTTTTAAAAGCATAGACATCCATTAACAAACATAT
GAAAGCACTTGGGGACATCACAGCAGCTGAAGATGAATGCATCACACTGT
TGTCACCACTGACAGTCCTACAAAGCAATGAAGGAAGCCAGAGATCAAAG
GAGCATACTGAACTTGCCAGTCCCAGGCATTAGTGCTAAAGAACAGGGTT
CCCCTATTCCAACTAAGAAATGGGCTCTCTTAAAACATAGAGCGAGATGT
TGGATTGAAAGAAAAAGCAATTCCAGGTAAGAAAACGGTTCTGAAACAAA
GTAATTCAGAAAGGGGCCAAAATGTTTGTGTGGATTACAGAATATAN

CCCCCTTCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCC
CCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTT
CTTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAG
ATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGATGGTGTCTTT
TGCTTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCGATTCTTG
ATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTA
CCCATATCTTCGAGGCTTTTCCCTACCTTCTCCTCTATAAGTTTCAGTGT
CTCTGGTTTTATGTGGAGTTCCTTAATCCACTTATATCTTCGAGGCTTTT
CCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTT
CCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCA
ATTCGCATTCTTCTACATCATAACCACCAGTTGTGCCAGCACCATTTGTT
GAAATTCATAGGGACACAAGAAGATGCCAGCCCACACACAGCCTAGGTCA
TGTCTGGCCTGATGCCTGGGTTTGTTAGTTGTTTTGGACATTGACAGCCT
TACTTTGATGTGGATTCTTTGAATACAATAGTGGAGTTCTGTAACTGGCA
AAAAAAAAATCA

Query= MSMg01no536_k05.b1 MSMg01no536_k05.b1 CHROMAT_FILE:
MSMg01no536_k05.b1 PHD_FILE: MSMg01no536_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:48 2005
         (531 letters)



>mm_chr5_17779243_17780174
          Length = 932

 Score =  944 bits (488), Expect = 0.0
 Identities = 503/508 (99%), Gaps = 1/508 (0%)
 Strand = Plus / Plus

                                                                       
Query: 25  aaaaagtttcacatagcttggaggctgtgggatgggaagaaaggagaaaagggacatagt 84
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 aaaaagtttcacatagcttggaggctgtgggatgggaagaaaggagaaaagggacatagt 284

                                                                       
Query: 85  gggaggaaaaaaa-tgttaccagttaattttctcaaagggaaaaatgttaataaatcatt 143
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gggaggaaaaaaaatgttaccagttaattttctcaaagggaaaaatgttaataaatcatt 344

                                                                       
Query: 144 cttattaagcatttgattacagctagagtaactataaagcaaaatcaaaagtactctcca 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 cttattaagcatttgattacagctagagtaactataaagcaaaatcaaaagtactctcca 404

                                                                       
Query: 204 cacacagcacatctgggtccttgaggtggcccagagaacgcctagcagcctgagttcagc 263
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 405 cacacagcacatctgggtccttgagatggcccagagaacgcctagcagcctgagttcagc 464

                                                                       
Query: 264 gcctggatcctctccacacccactctgtggcatgtgtgtatgtgtgatatcctgcatgca 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 465 gcctggatcctctccacacccactctgtggcatgtgtgtatgtgtgatatcctgtgtgca 524

                                                                       
Query: 324 tacacacacataaacaaataataacaaatgaaaatttaattttttaaaagcatagacatc 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tacacacacataaacaaataataacaaatgaaaatttaattttttaaaagcatagacatc 584

                                                                       
Query: 384 cattaacaaacatatgaaagcacttggggacatcacagcagctgaagatgaatgcatcac 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 cattaacaaacatatgaaagcacttggggacatcacagcagctgaagatgaatgcatcac 644

                                                                       
Query: 444 actgttgtcaccactgacagtcctacaaagcaatgaaggaagccagagatcaaaggagca 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 645 actgttgtcaccactgacagtcctacaaagcaatgaaggaagccagagatcaaagaagca 704

                                       
Query: 504 tactgaacttgccagtcccaggcattag 531
           ||||||||||||||||||||||||||||
Sbjct: 705 tactgaacttgccagtcccaggcattag 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 932
Length adjustment: 10
Effective length of query: 521
Effective length of database: 922
Effective search space:   480362
Effective search space used:   480362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)