Query= MSMg01no536_m19.b1 MSMg01no536_m19.b1 CHROMAT_FILE:
MSMg01no536_m19.b1 PHD_FILE: MSMg01no536_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:00 2005
(455 letters)
>mm_chr5_46497884_46498739
Length = 856
Score = 797 bits (412), Expect = 0.0
Identities = 442/452 (97%), Gaps = 1/452 (0%)
Strand = Plus / Plus
Query: 5 gaattctcattctgtttttgttttcttatgctaatttgagttctttgtttcaataacatt 64
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcattctgtttttgtttgcttatgctaatttgagttctttgtttcaataacatt 264
Query: 65 catccagaaggatgacaatcataagtggagacagttatagaaatag-aaataaactatga 123
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 catccagaaggatgacaatcataagtggagacagttatagaaatagaaaataaactatga 324
Query: 124 tcattcacccccaaacttttagaaataaggcagcaaaaagccttatggttataaaaaaaa 183
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcgttcacccccaaacttttagaaataaggcagcaaaaagccttatggttataaaaaaaa 384
Query: 184 atgtgtagcccaggctggcctcaaactcaggagcctcctgcctctgcctccttcagcata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgtgtagcccaggctggcctcaaactcaggagcctcctgcctctgcctccttcagcata 444
Query: 244 tcctaccagtatttcccatcacatctgacttgatgtgccagggtgggttggtactcagag 303
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 tcctaccagcatttcccatcacatctgacttgatgtgtcagggtgggttggtactcagag 504
Query: 304 aaatggagggtatagttgagggaggggcatatgaaggtgggactggccagagaggacagg 363
||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 505 aaagggagggtataattgagggaggggcatgtgaaggtgggactgggaagagaggacagg 564
Query: 364 gaagccatgattggaatgtaaagtgaataaatttaaaaaaccttttgtttttaataaagc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaagccatgattggaatgtaaagtgaataaatttaaaaaaccttttgtttttaataaagc 624
Query: 424 tatccttttacttcagttcatcatgaagggtt 455
||||||||||||||||||||||||||||||||
Sbjct: 625 tatccttttacttcagttcatcatgaagggtt 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 856
Length adjustment: 10
Effective length of query: 445
Effective length of database: 846
Effective search space: 376470
Effective search space used: 376470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_m19.g1 MSMg01no536_m19.g1 CHROMAT_FILE:
MSMg01no536_m19.g1 PHD_FILE: MSMg01no536_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:00 2005
(490 letters)
>mm_chr5_46644144_46645033
Length = 890
Score = 909 bits (470), Expect = 0.0
Identities = 485/490 (98%)
Strand = Plus / Minus
Query: 1 cctatttaattaaataccctcatattcagaggaataactcctcaaataattttatacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cctatttaattaaataccctcatattcagaggaataactcctcaaataattttatacaac 631
Query: 61 tagcatatcaataattaaaatgaggctaaatataattgtatctctttggtgattcactgt 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tagcatatcaatcattaaaatgaggctaaatataattgtatctctttggtgattcactgt 571
Query: 121 gattttgcttcatttatgggttgaacttagaaatatctcgtgatagaagaccaattaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 570 gattttgcttcatttatgggttgaacttagaaatatctcgtgatagaaggccaattaatg 511
Query: 181 aaattgatgtgatgcagaggatgggaaaaggggtcttataaatagctttgagacttcata 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aaattgatgtaatgcagaggatgggaaaaggggtcttataaatagctttgagacttcata 451
Query: 241 tttcaaaaacatgttgccatctccttccttgagagttatgtgggaggctggggctataaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tttcaaaaacatgttgccatctccttccttgagagttatgtgggaggctggggctataaa 391
Query: 301 aacaaattaagtttgttgtggttggatatatgcttatcagagtaggtgaaagaaatacca 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aacaaattaagtttgttgtagttggatatatgcttatcagagtaggtgaaagaaatacca 331
Query: 361 aataatacccaaaatgttgttgatacaattatacacaaaagtagagagacaaataggtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aataatacccaaaatgttgttgatacaattatacacaaaagtagagagacaaataggtga 271
Query: 421 aaaattaatatcttaaccaagctcactgtgacattagggaaagccaaattcatctaccta 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 270 aaaattaatatcttaaccaagctcactgtgacattagggaaagtcaaattcatctaccta 211
Query: 481 agtctgactg 490
||||||||||
Sbjct: 210 agtctgactg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
