NTGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACATTGATTTCCACTTTACAATCATTCTGGGTAGAATTGGA
TTACTGTGAACAGTTGGTTATTGGTATCGATTCAAGTTTCTTAGAACTCT
GCAGGGTACTGAGAAAAACCTCAGCCAACTGTAGATTCTTGAATGTGTTC
TCAGTCAACATGGCTCACAAGGAAAAGCACTAAGAATACAAGTGCAAATT
CAAAGTTTCTGTCCAAAACACTATAAATGAAAAGCCTTACTTGGTTTGGA
TTCTCTGGGTCTAATCTGCCCATTTTATATGAAGTGCAGCAACTATGTGG
GCCTTCAATTATAAAGTGAAATGGAAAAACACATTATTATCATATTTCTA
TAATTAAATATATTGGAATGTAACAATAGCCTTTTTGATTCCAGTCAACT
CTGATAATCATCCAAACAAACAAACAACCACAAAAAACAAAACAAACAAA
CAAACAAAAGCTTAGGAAAATATAGAAGAAAATATCAGCAGTACAATCAA
GTTCACTAGAGTTGAGATCCCAAACTGGCTTATGCATCTTAATATCAGTG
AAGACGAGGTACACCAAGGAGGCAAATAATAATTCAAATATATTGTAAAG
CAATCCAACAGAATACAATAGAACAGACTGTAGAATTGGTTAGAATATAA
CCATAAACATAAAGGAATGATAATATTAGACACACAGCATTGTCAAAACA
AAGTA

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTC
TGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTG
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATC
CTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACT
GATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATA
ATTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTG

Query= MSMg01no537_e03.b1 MSMg01no537_e03.b1 CHROMAT_FILE:
MSMg01no537_e03.b1 PHD_FILE: MSMg01no537_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:35 2005
         (645 letters)



>mm_chr5_42868848_42869892
          Length = 1045

 Score = 1166 bits (603), Expect = 0.0
 Identities = 611/615 (99%), Gaps = 4/615 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacattga--tttccactttacaatcattctgggtagaattggattactgtgaac 62
           |||||||||||||  |||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gaattcacattgagtttt--actttacaatcattctgggtagaattggattactgtgaac 556

                                                                       
Query: 63  agttggttattggtatcgattcaagtttcttagaactctgcagggtactgagaaaaacct 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agttggttattggtatcgattcaagtttcttagaactctgcagggtactgagaaaaacct 496

                                                                       
Query: 123 cagccaactgtagattcttgaatgtgttctcagtcaacatggctcacaaggaaaagcact 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cagccaactgtagattcttgaatgtgttctcagtcaacatggctcacaaggaaaagcact 436

                                                                       
Query: 183 aagaatacaagtgcaaattcaaagtttctgtccaaaacactataaatgaaaagccttact 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aagaatacaagtgcaaattcaaagtttctgtccaaaacactataaatgaaaagccttact 376

                                                                       
Query: 243 tggtttggattctctgggtctaatctgcccattttatatgaagtgcagcaactatgtggg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tggtttggattctctgggtctaatctgcccattttatatgaagtgcagcaactatgtggg 316

                                                                       
Query: 303 ccttcaattataaagtgaaatggaaaaacacattattatcatatttctataattaaatat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ccttcaattataaagtgaaatggaaaaacacattattatcatatttctataattaaatat 256

                                                                       
Query: 363 attggaatgtaacaatagcctttttgattccagtcaactctgataatcatccaaacaaac 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attggaatgtaacaatagcctttttgattccagtcaactctgataatcatccaaacaaac 196

                                                                       
Query: 423 aaacaaccacaaaaaacaaaacaaacaaacaaacaaaagcttaggaaaatatagaagaaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 aaacaaccacaaaaaacaaaacaaacaaacaaacaaaagcttaggaaaatatagaagaaa 136

                                                                       
Query: 483 atatcagcagtacaatcaagttcactagagttgagatcccaaactggcttatgcatctta 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 atatcagcagtacaatcaagttcactagagttgagatcccaaactggcttatgcatctta 76

                                                                       
Query: 543 atatcagtgaagacgaggtacaccaaggaggcaaataataattcaaatatattgtaaagc 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  atatcagtgaagacgaggtacaccaaggaggcaaataataattcaaatatattgtaaagc 16

                          
Query: 603 aatccaacagaatac 617
           |||||||||||||||
Sbjct: 15  aatccaacagaatac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)