XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTTC
TAGTCCAGACCTACAAAGTAGGTATACAACACATTTTTAATCTGCATCTT
GAGACGGGAAGACACGGGCCCGTATTTCAGATCTTGAGACAGAAAGACTT
ACCTTTAATATGGGCCATACCTTCTCCTAGAAGTCTATATAAGAACTTAG
AAGAAGGAAGATTTTTCTCTTTGCCTGCTTGCCCCCGTCTTACTAGCACA
TCCATTCCTTCACTGGCATTAGAGCCTATTTCTTTGGGATTCCAGTAATA
TTGAAGACCAGCGAGACATCAGCCTTGTGGGACTGAGTAACAGATTCTTG
GACTTTCTGTTCACAGTTAGCAATTATTGAATTAGCTGGACTGAAGCTTA
TTAGTCATAAGTCAATCCAGTAAACCCCCATACATATTATATATATTTGA
TTTTATATCCCTTCCATAAGTGCTGTGACTCTAGAGAGCCCTGAGTGATA
CAGTTGCTATTTGCTTTATAATTTCACTCATTTCTTCACTCTGGAAATTT
GGTCGCTTTGGGTTTGTTTTCAGCACAGCTAACATTTTGGGAATCAAAGA
ACTACTCTCACCTGTCCAGGTATCTTCCTCAACTCGAATTTGATAGATAA
GATAAAGTTAAGTTGGTCCTCTCATCCTCCAGCTCATAAATCTTCCATGG
GAGAATAGTGTCTTCTACATGTAGACAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTGTTTAGATCTGTACCCCATTTTTCATTAGGTT
ACTTAATTTTTTTCATGTGTAGTTTCTTAAGTTCTTTATATATTTTGGAT
ATCACCCCTTTGTCAGATATCAGGTTGGTGACAACCCTTTCTCAATCTGT
AGGTTGCTCTTTTGTCCTTTTGATGGTCCCCTTTCCCTTGCAGAAGCTTT
CCAGTGTTAGGAAGTCCAATTTATTAATTGTTGATCTTAGTGCTTGAGCC
TTTGGTATTCTGTCTGGGAAGTTGTCTCCTGTGCCAATGCATTCAAGTCT
ATTCCCTACTTTTTCTTTTTTCAGGTTCAGTGTACTTGGTTTTAGGTTGA
GGTCTTTGATCTACTTGGACTTNGAGTTTTGTGTAGGGTGTTTGGATCTC
TTTGCATCATTTAATTGGACATCTCCTATAACTAGGAAAGATTCCCAATG
AAGATATGGGGACATTAACTCACCCACAAAACCCTAGAACCCCCAATTGG
GCCTGGCCTACTTGAGGTACCGGGGATAAAAAAAGGGTTTCAAAAATTGA
GGGAAAGGGGCCAAAAAAATGCCTAAATTCTAACTATAGAAACCCCTTTT
TTATTGAAAGAGGGAAGAACACCCCCTGGGAAACCCTCTTTAAGGGGGGG
CTCCTCGGCTTATTTTTTGCCAAAAAGGGGGCCACCTCCGGGCAAATAAA
TAACCAG

Query= MSMg01no538_a04.b1 MSMg01no538_a04.b1 CHROMAT_FILE:
MSMg01no538_a04.b1 PHD_FILE: MSMg01no538_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:33 2005
         (694 letters)



>mm_chr5_97965557_97966650
          Length = 1094

 Score = 1301 bits (673), Expect = 0.0
 Identities = 686/691 (99%), Gaps = 2/691 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttctagtccagacctacaaagtaggtatacaacacatttttaatctgcatct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcacttctagtccagacctacaaagtaggtatacaacacatttttaatctgcatct 262

                                                                       
Query: 65  tgagacgggaagacacgggcccgtatttcagatcttgagacagaaagacttacctttaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgagacgggaagacacgggcccgtatttcagatcttgagacagaaagacttacctttaat 322

                                                                       
Query: 125 atgggccataccttctcctagaagtctatataagaacttagaagaaggaagatttttctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atgggccataccttctcctagaagtctatataagaacttagaagaaggaagatttttctc 382

                                                                       
Query: 185 tttgcctgcttgcccccgtcttactagcacatccattccttcactggcattagagcctat 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttgcctgcttccccccgtcttactagcacatccattccttcactggcattagagcctat 442

                                                                       
Query: 245 ttctttgggattccagtaatattgaagaccagcgagacatcagccttgtgggactgagta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttctttgggattccagtaatattgaagaccagcgagacatcagccttgtgggactgagta 502

                                                                       
Query: 305 acagattcttggactttctgttcacagttagcaattattgaattagctggactgaagctt 364
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 503 acagattcttggactttctgttcacagttagcaattattggattagctggactgaagctt 562

                                                                       
Query: 365 attagtcataagtcaatccagtaaacccccatacatattatatatat--ttgattttata 422
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 563 attagtcataagtcaatccagtaaacccccatacatattatatatatatttgattttata 622

                                                                       
Query: 423 tcccttccataagtgctgtgactctagagagccctgagtgatacagttgctatttgcttt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcccttccataagtgctgtgactctagagagccctgagtgatacagttgctatttgcttt 682

                                                                       
Query: 483 ataatttcactcatttcttcactctggaaatttggtcgctttgggtttgttttcagcaca 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ataatttcactcatttcttcactctggaaatttggtcgctttgggtttgttttcagcaca 742

                                                                       
Query: 543 gctaacattttgggaatcaaagaactactctcacctgtccaggtatcttcctcaactcga 602
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gccaacattttgggaatcaaagaactactctcacctgtccaggtatcttcctcaactcga 802

                                                                       
Query: 603 atttgatagataagataaagttaagttggtcctctcatcctccagctcataaatcttcca 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 atttgatagataagataaagttaagttggtcctctcatcctccagctcataaatcttcca 862

                                          
Query: 663 tgggagaatagtgtcttctacatgtagacag 693
           |||||||||||||||||||||||||||||||
Sbjct: 863 tgggagaatagtgtcttctacatgtagacag 893


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)