Query= MSMg01no538_d10.b1 MSMg01no538_d10.b1 CHROMAT_FILE:
MSMg01no538_d10.b1 PHD_FILE: MSMg01no538_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:49 2005
(702 letters)
>mm_chr5_122403811_122404911
Length = 1101
Score = 1253 bits (648), Expect = 0.0
Identities = 688/704 (97%), Gaps = 9/704 (1%)
Strand = Plus / Plus
Query: 5 gaattctctggagatatacctctgccccatgctcagattttagttgaaccatgagagact 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctggagatatacctctgccccatgctcagattttagttgaaccatgagagact 264
Query: 65 gttgctcttgggccctttcaaacagcaatttcttccacagctttggaatgtttttggcag 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 gttgctcttgggccctttcaaacagcaatttcttccacagctttggaatgtttt-ggcag 323
Query: 125 gcaggccatggacctggggactgttgctaacctcacttaaggggctcctagtggcctctt 184
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 324 gcaggccatggacctggggactgttgctaatctcacttaaggggctcctagtggcctctt 383
Query: 185 ggttgctcctgggcctttgccttttccttaaccaggccaagagagcttaagacaaaccct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggttgctcctgggcctttgccttttccttaaccaggccaagagagcttaagacaaaccct 443
Query: 245 tgccttttctgagcctcagtcttcctcatctgaaaaataggtacaaacccaccttttccc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgccttttctgagcctcagtcttcctcatctgaaaaataggtacaaacccaccttttccc 503
Query: 305 tcaggtacttgaaaaagacaaatgaaggcagagtctgagtttttgcccaaacacctataa 364
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 504 tcaggtacttgaaaaagacaaatgaaggcagagtctgagtttttgctcaaacacctataa 563
Query: 365 ggtgttgggtgaccaacagccactccagagtcacctccagctccagtcagcattgcccca 424
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 564 ggtgttgggt-accaacagccactccagagtcacctccagctccagtcagcgttgcccca 622
Query: 425 cttgcaagcatggatacctacaaaagaggctgagctcttgggataaaccactggacctac 484
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 623 cttgcaagcatggatacctacgaaagaggctgagctcttgcgataaaccactggacctac 682
Query: 485 ccctatccggaagtgggagttgacttgaatcctcagatgcttgtggaccggccccccc-c 543
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 683 ccctatccggaagtgggagttgacttgaatcctcagatgcttgtggaccg-cccccccac 741
Query: 544 ccc-----gccctctgctgtcagtttggaccagatacctgcggaggctccttggctacat 598
||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 742 cccaccctgccctctgctgtcagtttggaccagatgcctgcggaggctccttggctgcat 801
Query: 599 caactgtccagccccgaatctcacatcagcagacagaagggacagtctggatgctggttc 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 caactgtccagccccgaatctcacatcagcagacagaagggacagtctggatgctggttc 861
Query: 659 ctctgctcaaaacctctcctgactgtcattccatttccattcaa 702
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 ctctgctcaaaacctctcctgactgtcattccatttccattcaa 905
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1101
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1091
Effective search space: 754972
Effective search space used: 754972
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no538_d10.g1 MSMg01no538_d10.g1 CHROMAT_FILE:
MSMg01no538_d10.g1 PHD_FILE: MSMg01no538_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:49 2005
(170 letters)
>mm_chr5_122476253_122476822
Length = 570
Score = 319 bits (165), Expect = 5e-92
Identities = 168/169 (99%)
Strand = Plus / Minus
Query: 1 tataatctgggcggacctacatgccgtaagtcaaccaagtgaacatttttgattttgtta 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 369 tataatctgggcggacctacatgccttaagtcaaccaagtgaacatttttgattttgtta 310
Query: 61 cccgaataccatcttgcacaacggcttactcgactctgctctgtgggaaagcatgtgtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cccgaataccatcttgcacaacggcttactcgactctgctctgtgggaaagcatgtgtaa 250
Query: 121 ataaatactgggtgagccagagatggggtggggtgggggtggaggattt 169
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ataaatactgggtgagccagagatggggtggggtgggggtggaggattt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space: 91044
Effective search space used: 91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
