BAC Information

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BAC

Clone NameMSMg01-538E10
Chromosome5 (Build37)
Map Location 137,913,980 - 137,914,574
singlet/doubletsinglet
Overlap geneZan
Upstream geneCutl1, Mylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, EG665591
Downstream geneEpo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538E10.T7 (MSMg01no538_e10.b1)MSMg01-538E10.TJ (MSMg01no538_e10.g1)
ACCAG605044AG605045
length731738
length of high quality
(start - end)		644 (57 - 700)610 (69 - 678)
definitionCHROMAT_FILE: MSMg01no538_e10.b1 PHD_FILE: MSMg01no538_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:53 2005CHROMAT_FILE: MSMg01no538_e10.g1 PHD_FILE: MSMg01no538_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
CTTATGACAATACTCTTTCTTGCTTTTAAAAATTTTTTTCAAGATTTATT
TATTTTATGTATGTGAGTATACTGTAGCTATACAGATGGTTGTGGGCCTT
CATGTGGTTGTTGGGAATTGAATTTTTTAGGACCTCTGCTTGCTCCGGTC
AACTCTGCTTGCTCTGACCCGAAGATTTATTTATTTATTTTATTATTATT
TTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTT
CAGACACTCCAGAAGAGGGCGTCAGATCTTGTTACAGATGGTTGTGAGCC
ACCATGTGGTTGCTGGGATTTGAACTTCATACCTTCAGAAGAACAGTCGG
GTGCTCTTACCCACTGAGCCATCTCACCAGCCCCAGATTTATTTATTTAT
TATACATAAATACACTGTAGCTGACTTCAGACGCACCAGAAGAGAGCGTC
AGATCTCATTACGGGTGGTTGTGAGCCTCCATGGGATTTGAACTCAGGAC
CTTCAGAAGAGCAGTCGGTACTCTTACCCGCTGAGCCATCTCACCAGCCA
TTAAAAATATTTTATTTTACATATTTATGTGCACACATATGTACACACTT
GGCAGGCTGATGTATGCCTTGCCACATGTAGAGGTCAGATCACAGCTTCT
GAGAGTGTCTCTTCTTCCACTGTGGGTCCTG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGCTCTTGGTACAAATTACATACCCTGCCCAG
TCTATAAACTGGGCATTGTCTCTGTGTAAAGCTGTAAATTAAATGATGTT
TGTGGAGCATCTAGCCCATGTTCAGCGAGTCTAAGTTCCTTGTATAGGGC
TGGATTTTTCCCTTCTAGCCAGCCTAAAAGGAACAATCTGCATATATCAG
AGTAGTAGTGTGGGGTAACCCCTGCGATGACTTTACAGTCAGATTTTCAA
GGCACCAAAGACTTCTTTTGTTTTAGAGACAGCATGGAATGCAGCCCAGG
CTTGCCTCAAAATTGCCATGTGGCCTAGGATAACCTTGGATTTAGGATCC
TCCTGCCTCTACGTCCAGAATGCTGGGATAAAAGGTGTATGCCATCACAA
GGGAACCGTGCATGCTGGCCAAGTGCTTTACTAAGATCCATCTCCCAGCC
CACCAAGGGTTTATGGACACACACACAGGCTAAGCTAGGCCAGCCTGTGG
CCATGGGTCCTGGTCAGTCACTGTAGACTAGATAACCATGTTGAAAGGGG
ATCTCTTGCATAGTGACTGCTTGAGGAGCCAGGGGTGCAGGATGAAGTAG
CACCAAGAAACCAGAAGCTTCAATTCATGAGAAACCAGGGTCCTGCTTGC
TGAGCAGTCTCACCCCTAGTTTGGAAAGTTTGACGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_e10.g1 MSMg01no538_e10.g1 CHROMAT_FILE:
MSMg01no538_e10.g1 PHD_FILE: MSMg01no538_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:53 2005
         (610 letters)



>mm_chr5_137913780_137914789
          Length = 1010

 Score = 1056 bits (546), Expect = 0.0
 Identities = 587/610 (96%), Gaps = 15/610 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctcttggtacaaattacataccctgcccagtctataaactgggcattgtctctgtgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctcttggtacaaattacataccctgcccagtctataaactgggcattgtctctgtgta 260

                                                                       
Query: 61  aagctgtaaattaaatgatgtttgtggagcatctagcccatgttcagcgagtctaagttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagctgtaaattaaatgatgtttgtggagcatctagcccatgttcagcgagtctaagttc 320

                                                                       
Query: 121 cttgtatagggctggatttttcccttctagccagcctaaaaggaacaatctgcatatatc 180
           ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 321 cttgtatagggctggatttttcccttccagccagcctaaaaggaacactctgcatatatc 380

                                                                       
Query: 181 agagtagtagtgtggggtaacccctgcgatgactttacagtcagattttcaaggcaccaa 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
Sbjct: 381 agagtagtagtgtggggtaaccccttcgatgactttacagtcagattttcaagacaccga 440

                                                                       
Query: 241 agacttcttttgttttagagacagcatggaatgcagcccaggcttgcctcaaaattgcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacttcttttgttttagagacagcatggaatgcagcccaggcttgcctcaaaattgcca 500

                                                                       
Query: 301 tgtggcctaggataaccttggatttaggatcctcctgcctctacgtccagaatgctggga 360
           ||||||||||||||| |||| |||||||||||||||||||||||||||||||||      
Sbjct: 501 tgtggcctaggataatcttgaatttaggatcctcctgcctctacgtccagaatg------ 554

                                                                       
Query: 361 taaaaggtgtatgccatcacaagggaaccgtgcatgctggccaagtgctttactaagatc 420
                    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ---------tatgccatcacaagggaaccgtgcatgctggccaagtgctttactaagatc 605

                                                                       
Query: 421 catctcccagcccaccaagggtttatggacacacacacaggctaagctaggccagcctgt 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 606 catctcccagcccaccaagggtttatggacacacacacaggctaagctaggccagcgtgt 665

                                                                       
Query: 481 ggccatgggtcctggtcagtcactgtagactagataaccatgttgaaaggggatctcttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ggccatgggtcctggtcagtcactgtagactagataaccatgttgaaaggggatctcttg 725

                                                                       
Query: 541 catagtgactgcttgaggagccaggggtgcaggatgaagtagcaccaagaaaccagaagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 catagtgactgcttgaggagccaggggtgcaggatgaagtagcaccaagaaaccagaagc 785

                     
Query: 601 ttcaattcat 610
           ||||||||||
Sbjct: 786 ttcaattcat 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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