Query= MSMg01no538_g01.b1 MSMg01no538_g01.b1 CHROMAT_FILE:
MSMg01no538_g01.b1 PHD_FILE: MSMg01no538_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:00 2005
(568 letters)
>mm_chr5_74353913_74354880
Length = 968
Score = 919 bits (475), Expect = 0.0
Identities = 533/569 (93%), Gaps = 29/569 (5%)
Strand = Plus / Minus
Query: 4 ggaattcttttg----tccatatattttaaaaagacttatttatttttatatatatgagt 59
|||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 608 ggaattcttttgaaaa---atatattttaaaaagacttatttatttt--tatatatgagt 554
Query: 60 gttttgcctaaaggggatatgtgcactacatgggtgcagtgtccactgaggccagaagag 119
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 553 gttttgcctaaaggggatatgtgcaccacatgggtgcagtgtccactgaggccagaagag 494
Query: 120 ggcatcagatctggaactggagttgtggatcgaccttctgcagaagcggtcagtactctg 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 493 ggcatcagatctggaactggagttgtggattgaccttctgcagaagcggtcagtactctg 434
Query: 180 catcactgagccatagacccagaacccatgaccacgcccaagtattatagtgttcaaaat 239
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 433 catcactgagccatagacccagaacccatgaccacgcccaaatattatagtgttcaaaat 374
Query: 240 agtgggtttcattgtgagattttcacacacacacacacacacacacacacacacacacac 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 373 agtgggtttcattgtgagattttcacacacacacacacacacacacacacacacacgcac 314
Query: 300 acacacacacacacacacgcatacacatgcacacacatgcacacatacgcacaatatcta 359
|| ||||||||||||||||||||||| | ||||||||||||
Sbjct: 313 ac--------------------acacatgcacacacatgcacacacatgcacaatatcta 274
Query: 360 tctatctatctatctatctatctatctatctatctatctatctatctatctaatctatca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tctatctatctatctatctatctatctatctatctatctatctatctatctaatctatca 214
Query: 420 gtagttgtgcttggctcatatatcacaatatattacaatatctatcactgtatattttgt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gtagttgtgcttggctcatatatcacaatatattacaatatctatcactgtatattttgt 154
Query: 480 catatgtatcccaatccttatactttgcatgcattacctactcattacttcccttgccca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 catatgtatcccaatccttatactttgcatgcattacctactcattacttcccttgccca 94
Query: 540 ctcccttccctcctgctggtccccatcgt 568
|||||| ||||||||||||||||||||||
Sbjct: 93 ctccctcccctcctgctggtccccatcgt 65
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_g01.g1 MSMg01no538_g01.g1 CHROMAT_FILE:
MSMg01no538_g01.g1 PHD_FILE: MSMg01no538_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:01 2005
(431 letters)
>mm_chr5_74195990_74196820
Length = 831
Score = 810 bits (419), Expect = 0.0
Identities = 428/431 (99%)
Strand = Plus / Plus
Query: 1 ctgaatgaaatttaattccaccatcacccggtggagcttacatgaccaaaggaaccacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaatgaaatttaattccaccatcacccggtggagcttacatgaccaaaggaaccacag 260
Query: 61 caggacatctcatgatctttttcttcagcatagtgatttgaatgaaaatggcatccatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggacatctcatgatctttttcttcagcatagtgatttgaatgaaaatggcatccatag 320
Query: 121 gctcccatatttgcatgcctagtccccagtagatgacctgtttcagaaggattagggggt 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 gctcccatatttgcatgcctagtccccagtagatgacctgtttccgaaggattagggggt 380
Query: 181 gtgactttgttggaggtagtgtggtcttgtgggaggaggtgtgcagctaggggtggggaa 240
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gtggctttgttggaggtagtgtggtcttgtgggaggaggtgtgcagctaggggtggggga 440
Query: 241 gttgaaggaggtctaacataaattctaaaagtcattatcataaccactgatcagcttcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttgaaggaggtctaacataaattctaaaagtcattatcataaccactgatcagcttcca 500
Query: 301 aacgagctatttatagactgcaaatctctgaaatgaaagggattctaggttttcttaagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacgagctatttatagactgcaaatctctgaaatgaaagggattctaggttttcttaagg 560
Query: 361 accccagactgccccaaatgtatgctgtcttttctcctagcctccccaaagcggttctac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accccagactgccccaaatgtatgctgtcttttctcctagcctccccaaagcggttctac 620
Query: 421 aatctttacaa 431
|||||||||||
Sbjct: 621 aatctttacaa 631
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space: 346884
Effective search space used: 346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
