Query= MSMg01no538_h22.b1 MSMg01no538_h22.b1 CHROMAT_FILE:
MSMg01no538_h22.b1 PHD_FILE: MSMg01no538_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:09 2005
(687 letters)
>mm_chr5_133283309_133284396
Length = 1088
Score = 855 bits (442), Expect = 0.0
Identities = 610/720 (84%), Gaps = 101/720 (14%)
Strand = Plus / Plus
Query: 5 gaattcattgattctatttagtcctttcctggctgaacatgcagtcccctccagtatact 64
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattcattgatcctatttagtcctttcctggcagaacatgcagtcccctccagtatact 264
Query: 65 ttaagaacaatctgcctccattcatatgtgtgtatgaccttttatgtctagtgcttgcct 124
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaagaacaatctgcctccattcatatgtgtgtatgaccttttatgtctagtgcttgcct 324
Query: 125 aaccctgttgtctaaaacttctatgccttttcactttagttctggtaggaattggattta 184
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 acccctgttgtctaaaacttctatgccttttcactttagttctgataggaattggattta 384
Query: 185 tcagctttatctgtctgagcaaggcca-acaagccatgtgtcatgttggctaatttaggt 243
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 385 tcagctttatctgtctgagcaaggccacacaagccatgtgtcatgctggctaatttaggt 444
Query: 244 cacatgtatgctgttatttgagaaggtaggtcatattgcagggggtcaatttcacaccct 303
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 cacatgtatgctgttctttgagaaggtaggtcatattgcagggggtcaacttcacaccct 504
Query: 304 ggtttgtgatcgtacaaattcagtatgggcatcgcttggtgcagagagcactgcagggga 363
|||| || ||| |||||| ||
Sbjct: 505 ggtt--------------tt----------atc-cttggt----------ct-------- 521
Query: 364 aggtccagcttgaccatttc-tg---agt-ttcct--gtg---aga--taaa--cccggt 409
| | || |||| || ||| || | | | ||| |||| |
Sbjct: 522 ---t--a--tt-----tttcttgttaagtgtt--taagggcaaagacttaaaagc----- 562
Query: 410 tttactcagaaaggtgcttaacatgtagtgtgtgtatgtgttgtgaatatgtgtatgca- 468
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 --tactcagaaaggtgcttaacatgtagtgtgtgtatgtgttgtgaatatgtgtatgcat 620
Query: 469 -------------------tgtgtgtgtgtgtgtgtgtgtgtgtgtgta--tgtatgtat 507
|||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtatgtat 680
Query: 508 agcaagctgtcaatcttgagtggccttcctcaggtgtattccatcttatttttcagaaag 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agcaagctgtcaatcttgagtggccttcctcaggtgtattccatcttatttttcagaaag 740
Query: 568 gggaactcactgatctaaatagactatctggtcagagagccccagggatcccctctccct 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gggaactcactgatctaaatagactatctggtcagagagccccagggatcccctctccct 800
Query: 628 ccccagctccagaattacaagggttccctgtaacacttggctttgattacatgcattctg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccccagctccagaattacaagggttccctgtaacacttggctttgattacatgcattctg 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1088
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1078
Effective search space: 729806
Effective search space used: 729806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_h22.g1 MSMg01no538_h22.g1 CHROMAT_FILE:
MSMg01no538_h22.g1 PHD_FILE: MSMg01no538_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:10 2005
(654 letters)
>mm_chr5_133405398_133406451
Length = 1054
Score = 737 bits (381), Expect = 0.0
Identities = 554/703 (78%), Gaps = 142/703 (20%)
Strand = Plus / Minus
Query: 1 aaaaggaaacttcaagaactcattgtgtgggctggagagatggctcagcagttaaaagca 60
|||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 740 aaaaggaaactttaagaactcattgtgtgggctggagagatggctc-gaagttaaaagca 682
Query: 61 ctgattgctcttccagggaacccacgttcgattccccgtacccacatggcagctcacaac 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 681 ctgattgctcttccagggaacccacgttggattccccgtacccacatggcagctcacaac 622
Query: 121 catctgtacgtatcccagttccaagggatctgatgtcctcttctggcctccatcgacact 180
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catctgtatgtgtcccagttccaagggatctgatgtcctcttctggcctccatcgacact 562
Query: 181 cggcatgcacacggtgcacaggcacacagtgcacaggcacacggtgcacaagcacatggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cggcatgcacacggtgcacaggcacacagtgcacaggcacacggtgcacaagcacatggt 502
Query: 241 acacaggcacac------------------------------------------------ 252
||||||||||||
Sbjct: 501 acacaggcacacggtgcacaggcacacagtgcacaggcacacggtgcacaagcacatggt 442
Query: 253 --------------------ggc-------gcacaggcacacggtgcacaggcacacggt 285
||| ||||||||||||||||||||||||||||||
Sbjct: 441 acacaggcacacggtgcacaggcacacagtgcacaggcacacggtgcacaggcacacggt 382
Query: 286 gcacaagc---------------------------------------------------- 293
||||||||
Sbjct: 381 gcacaagcacatggtacacaggcacacggtgcacaggcacacagtgcacaggcacacggt 322
Query: 294 --------acatggtacacaggcacacggtgcacaggtacacgatgcacaggcacatgat 345
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacaagtacatggtacacaggcacacggtgcacaggtacacgatgcacaggcacatgat 262
Query: 346 gtataggcatatacgttacaggcaaaacattcacacacacaaagcagtaataatcaataa 405
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 gtataggcatatacgttacaggcaaaacatccacacacacaaagcagtaataatcaataa 202
Query: 406 ccagtcttgctagcagagcctcctttcacacaatctgctttggtttgagggcagttaaac 465
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 ccagtcttgctagcagagcctcctttcacaaaatctgctttggtttgagggcagttaaac 142
Query: 466 ttctgacccctaccttgccttccctgatctccatgtgcccccactcccacccccac---- 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ttctgacccctaccttgccttccctgatctccatgtgcccccactcccacccccaccccc 82
Query: 522 --cccccagggagaggggttgcagtttgaatgtgcaagctgtc 562
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tacccccagggagaggggttgcagtttgaatgtgcaagctgtc 39
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
