BAC Information

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BAC

Clone NameMSMg01-538I02
Chromosome5 (Build37)
Map Location 15,112,673 - 15,113,286
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream geneSpeer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538I02.T7 (MSMg01no538_i02.b1)MSMg01-538I02.TJ (MSMg01no538_i02.g1)
ACCAG605217AG605218
length734739
length of high quality
(start - end)
639 (36 - 674)612 (65 - 676)
definitionCHROMAT_FILE: MSMg01no538_i02.b1 PHD_FILE: MSMg01no538_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:10 2005CHROMAT_FILE: MSMg01no538_i02.g1 PHD_FILE: MSMg01no538_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:10 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TCAGTTCTAAGCCCCAATTTTTAATGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTAT
TGACGGTGTCTGTTGCCTTGCAGAACTTTGGAGTTTCATTAGGTCCCATT
TGTCAATTCTCGATCTTACTGCACAAGCCATTGCTGTTCTGTTCAGGAAT
TTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCTTCTAT
AAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATT
TGACCTTAGTACAAGGAGATAAGTATGGATGGATTCGCATTCTTCTACAT
GATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTT
CCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGT
GTGGGTTCATTTCTGGGTCTTCAATTCTGTTCCATTGGTCTACTTGTCTG
TCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAAG
CTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATACTTGAGAA
GAGATTTTGCTATCCTAGGTTTTTTGTTATTCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTCTTCTCAGGTACAACTGGGTCTTTGTCCAGTTGA
TAAAATGCAAGAAACATATCGTGCAAATGAAACGGAAGCAGCATTGAAAG
TCTGAGTAGCCGGTGGGCATCCCTGCACATGTGCCTGTGGGTAGCTGACA
GATCAGCTGGTTTAAAAGCAAGGCTGGTGGTCTAGTCAATCATGGTCGCT
GTTCTAGTGCTAAACCAGATTCAGGAGAAAGCTCTATTGTTGTTAAGACT
TGAGAGGAGCTTGGTGGCTGACTATGGGATGGATCCCCGGGTGGGGTAGT
CTCTGGATGGTCCATCCTTTCGTCTTAGCTTTGTCTCCGTAACTCCTTCC
ATGGGTATTTTGTTCCCTATTCTGACACTACTGCATATGCCAGCAAGATT
TTGCTGAAAGGACCTTGATATAGCTGTCTTGTGAGGCTATGCCAGTACCT
GGCAAACAGAAGTGGATGCTCACAGTCATTTATAGGATGGAGCACAGGGC
CTCCAATGGAGAAGCTAGAGAAAGCACCCAAGGAGCTGAAGGGATTTGCA
ACCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCCAGAACTTG
TGTCTCTAGCTGCATATGTACCAGAAGATGGCCTAGTCAGCCATCATTGG
GAAGAGAGGCCCCTAGGTCTTGCAAACTTTATATGCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_i02.g1 MSMg01no538_i02.g1 CHROMAT_FILE:
MSMg01no538_i02.g1 PHD_FILE: MSMg01no538_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:10 2005
         (612 letters)



>mm_chr5_15112473_15113484
          Length = 1012

 Score = 1067 bits (552), Expect = 0.0
 Identities = 598/614 (97%), Gaps = 2/614 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttctcaggtacaactgggtctttgtccagttgataaaatgcaagaaacatatcgtgc 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 ctcttctcaggtacaactgggtctttgtcaagttgataaaatgcaagaaacatatcgtgc 260

                                                                       
Query: 61  aaatgaaacggaagcagcattgaaagtctgagtagccggtgggcatccctgcacatgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgaaacggaagcagcattgaaagtctgagtagccggtgggcatccctgcacatgtgc 320

                                                                       
Query: 121 ctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagtcaatcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagtcaatcatg 380

                                                                       
Query: 181 gtcgctgttctagtgctaaaccagattcaggagaaagctctattgttgttaagacttgag 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 gtcgctgttctagtgctaaaccagattctggagaaagctctattgttgttaagacttgag 440

                                                                       
Query: 241 aggagcttggtggctgactatgggatggatccccgggtggggtagtctctggatggtcca 300
           ||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||
Sbjct: 441 aggagcttggtggctgattatgggatggatcatcgggtggggtagtctctggatggtcca 500

                                                                       
Query: 301 tcctttcgtcttagctttgtctccgtaactccttccatgggtattttgttccctattctg 360
           ||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 501 tcctttcttcttagctttgtctccgtaactccttccatggcttttttgttccctattctg 560

                                                                       
Query: 361 acactactgcatatgccagcaagattttgctgaaaggaccttgatatagctgtcttgtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acactactgcatatgccagcaagattttgctgaaaggaccttgatatagctgtcttgtga 620

                                                                       
Query: 421 ggctatgccagtacctggcaaaca--gaagtggatgctcacagtcatttataggatggag 478
           |||||||||||| |||||||||||  ||||||||||||||||||||| ||||||||||||
Sbjct: 621 ggctatgccagtgcctggcaaacacagaagtggatgctcacagtcatctataggatggag 680

                                                                       
Query: 479 cacagggcctccaatggagaagctagagaaagcacccaaggagctgaagggatttgcaac 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 cacagggcctccaatggagaagctagagaaagcacccaaggagctgaagggatctgcaac 740

                                                                       
Query: 539 cctataggtggaacaacaatatgaactaaccagtacccccagaacttgtgtctctagctg 598
           |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 741 cctataagtggaacaacaatatgaactaaccagtacccccagagcttgtgtctctagctg 800

                         
Query: 599 catatgtaccagaa 612
           |||||||| |||||
Sbjct: 801 catatgtagcagaa 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)