BAC Information

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BAC

Clone NameMSMg01-538O12
Chromosome5 (Build37)
Map Location 111,002,803 - 111,167,828
singlet/doubletdoublet
Overlap geneGalnt9, Noc4l, Ddx51, Ep400
Upstream geneLOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik
Downstream genePus1, Ulk1, Hscb, Chek2, Ttc28, Pitpnb, Mn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538O12.T7 (MSMg01no538_o12.b1)MSMg01-538O12.TJ (MSMg01no538_o12.g1)
ACCAG605524AG605525
length734738
length of high quality
(start - end)		641 (36 - 676)573 (66 - 638)
definitionCHROMAT_FILE: MSMg01no538_o12.b1 PHD_FILE: MSMg01no538_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:40 2005CHROMAT_FILE: MSMg01no538_o12.g1 PHD_FILE: MSMg01no538_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,167,266 - 111,167,828)(111,002,803 - 111,003,368)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACCA
GTGTGGACATCACTGTGCCTGTTATAATGTGAGCATGGTGCTCCTCCTCA
CTGATTTTTTTTTTTCACCTGTGTGGGTTTGTAAATACTTCCCCTAGTTC
CTGGAGAACATCCAGTGAGATGGCGCAGTGTGGGCACACCAGCTGTAGAC
CATGGGTGGGAGTCAGTGCCGGTCCCCTCTGCTCTCACCTTCCTCATGTT
AATAATGGAGCTACTCAGAAGAGCTTTAAGTACCAGTTAGGATATACACT
AAGGACTTAAAACTGATGAGAACAAAATGGGAAGAACAATCTGGACTGAT
GGCCATGAGCTGTGGTAATGAGTTCATGGGCGGTTAGTTTTTCTGCTTAG
CAATTCTGTGAGGTGGAATTGCTATTCCCATTTTCTGACAAGTTCAGGCC
ACAAGCTTACAATCTTGCCATGTCATCAACTAAGTGGTAGGGCTCTGTGT
AGTTATTGGGTTATTCTAGAGCCTTGAGGCAGGCAGGTATTGAGGCTTCC
TACACACTTGGTTAGGGAAGGATGGTCGTTCCCCCCAGGGCTACTAAACT
CTGTCCCCACGGCTGGCTTGTGGCTGGCAGACTTTCTATCTTATTCTTTC
TTTTCTTTCCCTTTTTCTCTCTCCCACCCTTCCCTCTCTAAAGAAGGTTT
TCTGTGTATCCCTGGGTGTCCTGGAACTCACAGG

GGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGTCCTGGGATTGGATGAGGAGAGACGCTTAGTAG
GAATTCTATATCCAACAAAATCATCTGCCACTCTAAAGGAGGGGGAAAAA
TTCTCCAACTGTCTTATAGCTTAGAAAATTCTTTCCATACAATCCTTCTG
AAATATAATTTGGTAATATCCTTCCATCAAATGAAAGACAATTCCCAGAC
CTAAGGAGATGTAGAATTCACAAAATCAGAGAGCCTACCCAGGCTGAGCA
TAAGAAAGGTTCCAAGGACAGTGTCCAATCAAGACAATACAAATGATGTA
GGAGGTAAAGGGTCCCCAGATGAGGGTGCTGAGCACTATACATGGTCCCC
ACTCTCCAATGAGACAGGCTTGGAGTCCACTCCACAATCATCTTGTTACA
AAGCCTGGCATACAGAATGATAACCAGCTGTTTTTTTTCTAGCCATGCTG
CCTGAGTGTGGTCTGCTGAGCATATGCTAGCAAACACTGTCACTACCACA
CTTAAATGCCCGTGCCAGAGCAAGATGGCTGGTCATGACCTAACATAAAA
CAACAAGGAAGGCCGGGCGGTGGTGGCACACACCTTTAATCCCAGCACTT
GGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
AAGTGAGTTCCAGAACAGCCAAGGCTATACAGAGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_o12.b1 MSMg01no538_o12.b1 CHROMAT_FILE:
MSMg01no538_o12.b1 PHD_FILE: MSMg01no538_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:40 2005
         (641 letters)



>mm_chr5_111167266_111168306
          Length = 1041

 Score = 1065 bits (551), Expect = 0.0
 Identities = 560/563 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaccagtgtggacatcactgtgcctgttataatgtgagcatggtgctcctcctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 563 gaattccaccagtgtggacatcactgtgcctgttataatgtgagcatggtggtcctcctc 504

                                                                       
Query: 65  actgatttttttttttcacctgtgtgggtttgtaaatacttcccctagttcctggagaac 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 503 actgatttttttttttcacctgtgtgggtttgtgaatacttcccctagttcctggagaac 444

                                                                       
Query: 125 atccagtgagatggcgcagtgtgggcacaccagctgtagaccatgggtgggagtcagtgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atccagtgagatggcgcagtgtgggcacaccagctgtagaccatgggtgggagtcagtgc 384

                                                                       
Query: 185 cggtcccctctgctctcaccttcctcatgttaataatggagctactcagaagagctttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cggtcccctctgctctcaccttcctcatgttaataatggagctactcagaagagctttaa 324

                                                                       
Query: 245 gtaccagttaggatatacactaaggacttaaaactgatgagaacaaaatgggaagaacaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtaccagttaggatatacactaaggacttaaaactgatgagaacaaaatgggaagaacaa 264

                                                                       
Query: 305 tctggactgatggccatgagctgtggtaatgagttcatgggcggttagtttttctgctta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tctggactgatggccatgagctgtggtaatgagttcatgggcggttagtttttctgctta 204

                                                                       
Query: 365 gcaattctgtgaggtggaattgctattcccattttctgacaagttcaggccacaagctta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gcaattctgtgaggtggaattgctattcccattttctgacaagttcaggccacaagctta 144

                                                                       
Query: 425 caatcttgccatgtcatcaactaagtggtagggctctgtgtagttattgggttattctag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 caatcttgccatgtcatcaactaagtggtagggctctgtgtagttattgggttattctag 84

                                                                       
Query: 485 agccttgaggcaggcaggtattgaggcttcctacacacttggttagggaaggatggtcgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 83  agccttgaggcaggcaggtattgaggcttcctacacacttggttagggaaggatggtggt 24

                                  
Query: 545 tccccccagggctactaaactct 567
           |||||||||||||||||||||||
Sbjct: 23  tccccccagggctactaaactct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no538_o12.g1 MSMg01no538_o12.g1 CHROMAT_FILE:
MSMg01no538_o12.g1 PHD_FILE: MSMg01no538_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:40 2005
         (573 letters)



>mm_chr5_111002601_111003568
          Length = 968

 Score = 1042 bits (539), Expect = 0.0
 Identities = 561/571 (98%), Gaps = 5/571 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   tcctgggattggatgaggagagacgcttagtaggaattctatatccaacaaaatcatctg 62
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tcctgggtttggatgaggagagacgcttagtaggaattctatatccaacaaaatcatctg 262

                                                                       
Query: 63  ccactctaaaggagggggaaaaattctccaactgtcttatagcttagaaaattctttcca 122
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccactctaaaggagggggaaaaaatctccaactgtcttatagcttagaaaattctttcca 322

                                                                       
Query: 123 tacaatccttctgaaatataatttggtaatatccttccatcaaatgaaagacaattccca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tacaatccttctgaaatataatttggtaatatccttccatcaaatgaaagacaattccca 382

                                                                       
Query: 183 gacctaaggagatgtagaattcacaaaatcagagagcctacccaggctgagcataagaaa 242
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 383 gacctaaggagatgtagaattcacaaaatcggagagcctacccaggctgagcataagaaa 442

                                                                       
Query: 243 ggttccaaggacagtgtccaatcaagacaatacaaatgatgtaggaggtaaagggtcccc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggttccaaggacagtgtccaatcaagacaatacaaatgatgtaggaggtaaagggtcccc 502

                                                                       
Query: 303 agatgagggtgctgagcactatacatggtccccactctccaatgagacaggcttggagtc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agatgagggtgctgagcactatacatggtccccactctccaatgagacaggcttggagtc 562

                                                                       
Query: 363 cactccacaatcatcttgttacaaagcctggcatacagaatgataaccagctgttttttt 422
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 563 cactctacaatcatcttgttacaaagcctggcatacagaatgataaccagctgttt---- 618

                                                                       
Query: 423 tctagccatgctgcctgagtgtggtctgctgagcatatgctagcaaacactgtcactacc 482
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 619 -ctagccatgctgcctgagtgtggtctgctgagcacatgctagcaaacactgtcactacc 677

                                                                       
Query: 483 acacttaaatgcccgtgccagagcaagatggctggtcatgacctaacataaaacaacaag 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 acacttaaatgcccgtgccagagcaagatggctggtcatgacctaacataaaacaacaag 737

                                          
Query: 543 gaaggccgggcggtggtggcacacaccttta 573
           |||||||||||||||||||||||||||||||
Sbjct: 738 gaaggccgggcggtggtggcacacaccttta 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 968
Length adjustment: 10
Effective length of query: 563
Effective length of database: 958
Effective search space:   539354
Effective search space used:   539354
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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