Query= MSMg01no539_b21.b1 MSMg01no539_b21.b1 CHROMAT_FILE:
MSMg01no539_b21.b1 PHD_FILE: MSMg01no539_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:56 2005
(585 letters)
>mm_chr5_63196248_63197232
Length = 985
Score = 1110 bits (574), Expect = 0.0
Identities = 580/582 (99%)
Strand = Plus / Plus
Query: 4 atacccgtctagcgtttgtgtcctttctgggggacttagctctggttctaatgcttctgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 atacccgtctagcgtttgtgtcctttctgggggacttagctctggttctaatgcttctgt 263
Query: 64 ggtaagcactgtaactgctgagtcattttcccatttagggagctctgtaaatgctgggcg 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtaaacactgtaactgctgagtcattttcccatttagggagctctgtaaatgctgggcg 323
Query: 124 tggtggcgcatgcccttaatcccagcactcgggaggcagaggcaggcagatttctgagtt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggtggcgcatgcccttaatcccagcactcgggaggcagaggcaggcagatttctgagtt 383
Query: 184 cgaggccagcctggtctacaaagtgagttccaggacagccagagctacacagagaaaccc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cgaggccagcctggtctacaaagtgagttccaggacagccagagctacacagagaaaccc 443
Query: 244 tgtctcaaaaaacaaaacaaacaaactaaaaaagaagctctgtcaaataatgtttgtgtt 303
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtctcaaaaaacaaaacaaacacactaaaaaagaagctctgtcaaataatgtttgtgtt 503
Query: 304 tttacatatttagttctaaagtaaatagctttttcttggagtaataaatgcaattttttc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttacatatttagttctaaagtaaatagctttttcttggagtaataaatgcaattttttc 563
Query: 364 tcacagatacctctccatatatatttatcacatatacacttcttggacccataacggact 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcacagatacctctccatatatatttatcacatatacacttcttggacccataacggact 623
Query: 424 tacatatttatttaaaacaatgatagatcgttttattatttgggctctgtaattttagtc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tacatatttatttaaaacaatgatagatcgttttattatttgggctctgtaattttagtc 683
Query: 484 atagtagacctacacagtagactatatgtgtataacctcctccaaagttaatcttacctt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atagtagacctacacagtagactatatgtgtataacctcctccaaagttaatcttacctt 743
Query: 544 cttcattattgttttatattatatgtgaggttaccaatacgc 585
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cttcattattgttttatattatatgtgaggttaccaatacgc 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_b21.g1 MSMg01no539_b21.g1 CHROMAT_FILE:
MSMg01no539_b21.g1 PHD_FILE: MSMg01no539_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:56 2005
(284 letters)
>mm_chr5_63367208_63367890
Length = 683
Score = 520 bits (269), Expect = e-152
Identities = 280/284 (98%), Gaps = 1/284 (0%)
Strand = Plus / Minus
Query: 1 aggagtcccatttgaaaaatttaagagcctaatgcctttccgggggggcgggggggctct 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 379 aggagtcccatttgaaaaatttaagagcctaatgcctttcc-ggggggcgggggggctct 321
Query: 61 gcttttataactcagttaatgtctaatggtactatctttagtgtcatttaagatcaacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcttttataactcagttaatgtctaatggtactatctttagtgtcatttaagatcaacat 261
Query: 121 atgaatacatatgaactttaaagaacacattcagaccatagcagagattctctaaattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atgaatacatatgaactttaaagaacacattcagaccatagcagagattctctaaattta 201
Query: 181 ttgtttttactgtttgtctgtttgatggttggttgttttttgggtttttgtttgttttgt 240
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 200 ttgtttttactgtttgtctgtttgttggttggttgttttttgggtttttatttgttttgt 141
Query: 241 tgttgttgttttacnagtgaatggtgtgaggataatcatataga 284
|||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 140 tgttgttgttttacaagtgaatggtgtgaggataatcatataga 97
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 683
Length adjustment: 9
Effective length of query: 275
Effective length of database: 674
Effective search space: 185350
Effective search space used: 185350
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
