NAATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAGCTAGTATTTGGTCTTGGGTGTGATGGATATGAAGTTATA
AAGTAGATGAAGGACCTAAGTAAGTACAGTAACCAAGACTCACATCTGCA
ACAACCTCTTAAGTACAATTGCCCTTGCATTTGTAAAAAGCAGTAAAATC
AGTTGTGCTGTATTAGCTCAAACTATATGATGTCCCTGATGTCTGATCTT
TTTTTCAAAAATTAAGTAAAAGCTCAATCCTTATACAACAATGTCCAGCA
CAGGTTGAATTTTGGTATATTTCCTAATAAAGATATTTTAATTATAGTCA
CTTATATGAAAGGCTTATGTGTAGCAAAAAAAATAATTTTCACATCACAC
TGGTGATGCATGCAATGTCTTTTTTGGTATCTGTAAACTTTGTTGAAATT
ATATTATTTTGGCTTAATAGATACAACAAAAAATTCATGCACTACAAATG
AATATCTTTGTGGCATGTGAGTTACACCCTGGGTGGCATCAAAATTTACT
TCTTATGCACTCTGTGCACTGGTGTTGATATAATTGTAAAGGATAGCCAC
ACTGTAAACTATAGCTGTAATTATTTCCATATTTAGTGAGGTAGAGAAAA
GGCATGCATGGAAGGTAGGAACTGAGATGGTGCTCCAAATATTCCTTAGA
ATACTCTGAATATTAAGGAAAGATTTGCTATCCTGTTAGCACCTGAAAGT
AAN

ATCCCGACACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTATCCCCCGCGGAATTCAAGGGCAGGGAGGCAGGAGTGGGTT
GGTGGTTGGGGGAACATCCTCATAGAAGCGGGGGGAGAGGGTATTGGGTA
GGGAGTTCTGTTTTAATCCCCTCCTCCACTCCATTTTCTTTTTTTCTTCC
CTTCCCTTTTTCCTTTCTCCCCTCTTTTTTCTTACGATCTTCTTTTTTTC
TTTTTCCTTTTCCTTTTTTCCTCCCCTTTTCTTCTTTTTCTCCTTTTTCT
TCTACCTCATTTTCTTTTTCTCTCTCCCCCTCCTTTCTCCTCCTTTCCCT
TTCTCCTCCCCTCTTTTTTCCTTCTTTTCTTCTTTTTTTTCTTTCCCCCC
TCCCCTTTTCTTTTCCCCCCCCCCCCTTCCTCTTTTCCCTCTTCTTTCCC
TCTTTTTCTTTCCCTTCTTTTTCCCTCCCCCTTTTCTTTTCTTCTCTCTT
CCTTCTTTTCCTTTTCTTTTTCCTTCTCCCCCTCCCTCTTTCCTCCTCTT
TTTTCTTTCCTTTTTTTTCCTTTTCCCTCTCCCACTTTTTCTCCTCCCTC
CCCCCTTTTTCCCCCCCCCCTTCCTTTTCTCTTATCCCCTCCTTCTCTCC
CTCTCTTTCTTTCCACTTATCCCTCCTTTCTTTTCTACTTTTCCCCCTTT
CTCTCCTTCTCCTTTCTCCTTCCTCCCTTCTTTTCCCTCTACTTCTCTCC
TTTCCCCCTCACCTTTTTCCTCCTTCTTCTTCCCCCTTTCTTCCTCTCCA
CCG

Query= MSMg01no539_c09.b1 MSMg01no539_c09.b1 CHROMAT_FILE:
MSMg01no539_c09.b1 PHD_FILE: MSMg01no539_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:59 2005
         (702 letters)



>mm_chr5_41272626_41273732
          Length = 1107

 Score = 1245 bits (644), Expect = 0.0
 Identities = 687/704 (97%), Gaps = 7/704 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagctagtatttggtcttgggtgtgatggatatgaagttataaagtagatgaa 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagcaagtatttggtcttgggtgtgatggatatgaagttataaagtagatgaa 264

                                                                       
Query: 65  ggacctaagtaagtacagtaaccaagactcacatctgcaacaacctcttaagtacaattg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggacctaagtaagtacagtaaccaagactcacatctgcaacaacctcttaagtacaattg 324

                                                                       
Query: 125 cccttgcatttgtaaaaagcagtaaaatcagttgtgctgtattagctcaaactatatgat 184
           |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccctcgcatttgtaaaaagcattaaaatcagttgtgctgtattagctcaaactatatgat 384

                                                                       
Query: 185 gtccctgatgtctgat-ctttttttcaaaaattaagtaaaagctcaatccttatacaaca 243
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtccctgatgtctgatcctttttttcaaaaattaagtaaaagctcaatccttatacaaca 444

                                                                       
Query: 244 atgtccagcacaggttgaattttggtatatttcctaataaagatattttaattatagtca 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 atgtccagcacaggttgaattttggtatattt-ctaataaagatattttaattatagtca 503

                                                                       
Query: 304 cttatatgaaaggcttatgtgtagcaaaaaaa-----ataattttcacatcacactggtg 358
           |||||| |||||||||||||| ||||||||||     |||||||||||||||||||||||
Sbjct: 504 cttatacgaaaggcttatgtgcagcaaaaaaaaaatcataattttcacatcacactggtg 563

                                                                       
Query: 359 atgcatgcaatgtcttttttggtatctgtaaactttgttgaaattatattattttggctt 418
           |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 564 atgcatgcaatgtcttttttggtatctgtaaactttattgaaattatattattctggctt 623

                                                                       
Query: 419 aatagatacaacaaaaaattcatgcactacaaatgaatatctttgtggcatgtgagttac 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aatagatacaacaaaaaattcatgcactacaaatgaatatctttgtggcatgtgagttac 683

                                                                       
Query: 479 accctgggtggcatcaaaatttacttcttatgcactctgtgcactggtgttgatataatt 538
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 684 accctgggtggcatcaaaattcacttcttatgcactctgtgcactggtgttgatataatt 743

                                                                       
Query: 539 gtaaaggatagccacactgtaaactatagctgtaattatttccatatttagtgaggtaga 598
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 744 gtaaaggatagccacactgtaaactatagttgtaattatttccatatttagtgaggtaga 803

                                                                       
Query: 599 gaaaaggcatgcatggaaggtaggaactgagatggtgctccaaatattccttagaatact 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 804 gaaaaggcatgcatggaaggtaggaactgagatggtgctccaaatattccttagagtact 863

                                                       
Query: 659 ctgaatattaaggaaagatttgctatcctgttagcacctgaaag 702
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ctgaatattaaggaaagatttgctatcctgttagcacctgaaag 907


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1107
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1097
Effective search space:   759124
Effective search space used:   759124
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)