BAC Information

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BAC

Clone NameMSMg01-539D17
Chromosome5 (Build37)
Map Location 18,666,691 - 18,667,348
singlet/doubletsinglet
Overlap genenone
Upstream geneGnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539D17.T7 (MSMg01no539_d17.b1)MSMg01-539D17.TJ (MSMg01no539_d17.g1)
ACCAG605772AG605773
length1,283768
length of high quality
(start - end)		---658 (74 - 731)
definitionCHROMAT_FILE: MSMg01no539_d17.b1 PHD_FILE: MSMg01no539_d17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:06 2005CHROMAT_FILE: MSMg01no539_d17.g1 PHD_FILE: MSMg01no539_d17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAACAACGTCTGATATAGTCCACCAGAAGNCGCACGGAGAAGAAGCGAGG
CCCACAACACAAAAAAGAGAGCGAAGCGAACCGAGAGGAAGGAGTCGCGA
TCATAAACAATAGAGACTGGGATGGGGGCTCTTACAATAATGTATCGTAC
GTAACAGTACATCTAACGCCTCTGCGTCTGGCGACTGGCGCGGACGCGCG
CAACGTACGAATGGTAGTGGCGCCGAGGCACACGCGCAACACCACGCCGT
ACGTTCCAGAACACACCCCACTCACATTTTATCCGTTCTATTCCTCTCAC
ATCCATTGCCTATAAGACAAAACACTACACTAAAACATCATCCACCTCTG
CTCACGACATAGCACCCCACTGCGTTCAGTACATATAACCATTAATGCTA
CGCGGAAACACCGAGGCCGATGCTCCCCCCCGTCACTTATCATCGCGGAC
TCCTCAGCTACTTCCGCGCGCGTACGATCCATATTTGTCCCCCCTTGCCG
GCGCTGCGCACCACAGCGCCGTGCCATAGTACACAGGCAGGACCAAGCCG
GACGCCCGCGGAGCGATGACACGCTTTGACGCGCCGTTACGCCTAGATAA
CGCGCTGTAACATGCCCCCACAACACGACGACTTTATATATCGCACGCCC
AACGTACAACGATCGCCGCCCACGCACTTAGTCTGGCACACTCACTGTGG
CCACACCGGACGGAATGATTCGGTTCTCATCGAGCGGCGTTACGTTACAC
ACGTATCAGTGGGATACATACTAGACGATAGGCGTCAGAATGATACGCGT
GCACGAGAAGGCGGTGCGCATNTCTCAGTATCTAATTACGGACGTAGAGA
GCGTAGAAGATCAGCTACATTGAGAGAGTTATGTATANAATCATAAATCA
CCCAATAAACTAACGCTCAAGGCGAATACACACATATATTTGATGATACC
AATACTAACACTAACGATTCGCCCCAGGTAAAGAATAACACATACGCTTA
CCATCGCTACGCACGGCCCCATAGCAACGAATCGCTATCGGACTATATGC
GCGAGTATGGTAGTCCGGCGAGCGAGACGCGGCGCCTCCGATCTACGCGA
GTAGCTCAAACACGTCACTCGTCTATACGCATATTATACATACGAGCGCC
CACGACCACCACATATATCTCATAGAATTATCTCCTACCATTACTTCTTG
TCTTATGACACTGCGACGGATCTGGAGTATTCCGATAGATACGCAATATC
ACCAGCCGCATATAAGTATGGCGTGAGATGTGT

AATTCTATGGGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAAATTCACCTGCCTCTGCCTCCCAA
GTGCTGCGATTAAAGGCGTGCACCACCAAACCCAGCTGTGTGTGATTCTT
TTAACCTAATTTAGATTGTATTCTGGGAAACTGATTTAGTAGGTCAAAAA
TATATATGATATGACTTTTGAGAAATACTAATAAATTTCTTCCTGAAAAT
ATGATTTTCACTCTTGAAATCCAGCAACAGTAAGTGGCTGGCATTTATTA
TGTGCTTTTCTAGCATTGCTAAAATACTAATTGATTACTTATTTGACTGT
ACATTTGCCTCTTTTATTATGGATAAGGCTGAATTTCCCTGTTTGACGTC
CTAGTAATTCATGGAATTTCACTCTAATCTTTTTACATAACTTTGCATTA
TTTTATTGTTTCCTGGTTACTCATTTATTTATTGTCATCTGAAAGACATG
CAATAATTTTCACACAGATTCATGTGTGACCTACATATGTAGCCCTAATA
GTTTATTTTTTCTCATGTTTTGCAAATATTTTTGTATTTAATTTAATTTA
AGTTTTTACATATTCACTTTACTTCCCTTCCACTGTCCCCTCCTGGTCAC
CCCCTCTCACAATTCTTTCCCCACCCCCTTCTCCTTCTCGTCTGAGCAGA
TGGGGCTTCCCTGGGTACCTACCAACCCTGGCACTTCTAGTCTTCATGGG
ACTAGGCACTTTCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_d17.g1 MSMg01no539_d17.g1 CHROMAT_FILE:
MSMg01no539_d17.g1 PHD_FILE: MSMg01no539_d17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:07 2005
         (658 letters)



>mm_chr5_18666585_18667642
          Length = 1058

 Score = 1257 bits (650), Expect = 0.0
 Identities = 656/658 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaattcacctgcctctgcctcccaagtgctgcgattaaaggcgtgcaccaccaaaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 764 agaaattcacctgcctctgcctcccaagtgctgcgattaaaggcgtgcatcaccaaaccc 705

                                                                       
Query: 61  agctgtgtgtgattcttttaacctaatttagattgtattctgggaaactgatttagtagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 agctgtgtgtgattcttttaacctaatttagattgtattctgggaaactgatttagtagg 645

                                                                       
Query: 121 tcaaaaatatatatgatatgacttttgagaaatactaataaatttcttcctgaaaatatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tcaaaaatatatatgatatgacttttgagaaatactaataaatttcttcctgaaaatatg 585

                                                                       
Query: 181 attttcactcttgaaatccagcaacagtaagtggctggcatttattatgtgcttttctag 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 584 attttcactcttgaaatccagcaacagtaagtggctagcatttattatgtgcttttctag 525

                                                                       
Query: 241 cattgctaaaatactaattgattacttatttgactgtacatttgcctcttttattatgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cattgctaaaatactaattgattacttatttgactgtacatttgcctcttttattatgga 465

                                                                       
Query: 301 taaggctgaatttccctgtttgacgtcctagtaattcatggaatttcactctaatctttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 taaggctgaatttccctgtttgacgtcctagtaattcatggaatttcactctaatctttt 405

                                                                       
Query: 361 tacataactttgcattattttattgtttcctggttactcatttatttattgtcatctgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tacataactttgcattattttattgtttcctggttactcatttatttattgtcatctgaa 345

                                                                       
Query: 421 agacatgcaataattttcacacagattcatgtgtgacctacatatgtagccctaatagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agacatgcaataattttcacacagattcatgtgtgacctacatatgtagccctaatagtt 285

                                                                       
Query: 481 tattttttctcatgttttgcaaatatttttgtatttaatttaatttaagtttttacatat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tattttttctcatgttttgcaaatatttttgtatttaatttaatttaagtttttacatat 225

                                                                       
Query: 541 tcactttacttcccttccactgtcccctcctggtcaccccctctcacaattctttcccca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tcactttacttcccttccactgtcccctcctggtcaccccctctcacaattctttcccca 165

                                                                     
Query: 601 cccccttctccttctcgtctgagcagatggggcttccctgggtacctaccaaccctgg 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 cccccttctccttctcgtctgagcagatggggcttccctgggtacctaccaaccctgg 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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