Query= MSMg01no539_f17.b1 MSMg01no539_f17.b1 CHROMAT_FILE:
MSMg01no539_f17.b1 PHD_FILE: MSMg01no539_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:17 2005
(582 letters)
>mm_chr5_4782133_4783114
Length = 982
Score = 1056 bits (546), Expect = 0.0
Identities = 570/578 (98%)
Strand = Plus / Minus
Query: 5 gaattctggattctcatgaatgctagcaaactaaagtcttctcctttaattttgttaatt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gaattctggattctgatgaatgctagcaaactaaagtcttctcctttaattttgttaatt 723
Query: 65 aatgaattaatcaactaattaggtgttttgttatagcacaaggaatctaatatgggagtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 aatgaattaatcaactaattaggtgttttgttatagcacaaggaatctaatatgggagtg 663
Query: 125 agaagaggattatcttgctttcctgattccttgtatttcttttcttttactgagataatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 agaagaggattatcttgctttcctgattccttgtatttcttttcttttactgagataatc 603
Query: 185 tttggtctgtgacttggggctctcgatgtcctaccttggtccttccacattcttgtgcct 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tttggtctgtgacttggggttctcgatgtcctaccttggtccttccacattcttgtgcct 543
Query: 245 ttgccactcattattttatcatcagccataggcatcagagtgaaattacaggttgtaccc 304
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 542 ttgccactcattattttatcatcggccataggcagcagagtgaaattacaggttgtaccc 483
Query: 305 ttgtattctgatttctgcagaatggcttactttcgtatattaggagtaatgttcaggatg 364
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 482 ttgtattctgatttctgcagaatggcttactttcatatattaggagtaatgttcaggatg 423
Query: 365 tgatagacacatctattttctggtagagaaaacgtcattcaagatgccactaaggatgca 424
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 422 tgatagacccatctattttctggtagagaaaacatcattcaagatgccactaaggatgca 363
Query: 425 tttgaatctactaacatctttaaataccaagggaagggctcttcagcataagaataaact 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tttgaatctactaacatctttaaataccaagggaagggctcttcagcataagaataaact 303
Query: 485 gacctaaatataaggggctttttgcattaagcttgttttaaaagtgaaactagatttcaa 544
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gacctaaatatatggggctttttgcattaagcttgttttaaaagtgaaactagatttcaa 243
Query: 545 aaatctttgtccccagagaagcttcccttccctctgag 582
||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aaatctttgtccccagagaagcttcccttccctctgag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_f17.g1 MSMg01no539_f17.g1 CHROMAT_FILE:
MSMg01no539_f17.g1 PHD_FILE: MSMg01no539_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:17 2005
(507 letters)
>mm_chr5_4650244_4651145
Length = 902
Score = 934 bits (483), Expect = 0.0
Identities = 500/507 (98%), Gaps = 5/507 (0%)
Strand = Plus / Plus
Query: 1 ttgggcttgccaccgctctttctgattagctgagcacacattcgaatcactgctgtggtt 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ttgggcttgccaccgctctttctgattagctgagcacacattcaaatcactgctgtggtt 260
Query: 61 attaaatccatgtgctgcattccatgcttgggagaggacagacagagagagaaaagaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaaatccatgtgctgcattccatgcttgggagaggacagacagagagagaaaagaaga 320
Query: 121 gagactatgaagggcaatcagggaaaactggccttggaaactgacttgaaaaatacttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagactatgaagggcaatcagggaaaactggccttggaaactgacttgaaaaatacttat 380
Query: 181 cccctccccaatacaatcacacctgttaacatttgaggggcttttcttgacactctgagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccctccccaatacaatcacacctgttaacatttgaggggcttttcttgacactctgagt 440
Query: 241 atcataaggatatatttgatgacaagaagttttaggcatgctgtaccaaactactgagtg 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcata-ggatatatttgatgacaagaagttttaggcatgctgtaccaaactactgagtg 499
Query: 301 acttaaaataacagacagttttttcttagagttctagagatgggaagatccaaatatgaa 360
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 500 acttaaaataaca--cagttttttcttagagttctagagatggggagatccaaatatgaa 557
Query: 361 agcccacctttaacactggacgagggtcttcttgctgagttcccacggggtgggagagat 420
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agcccacctt--acactggacgagggtcttcttgctgagttcccacggggtgggagagat 615
Query: 421 ggaagggatggatttgctgtggaagcccatgcgtatgacaataatctctcctggtttaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggaagggatggatttgctgtggaagcccatgcgtatgacaataatctctcctggtttaat 675
Query: 481 cacctcctaaagggactgcatctccac 507
|||||||||||||||||||||||||||
Sbjct: 676 cacctcctaaagggactgcatctccac 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 902
Length adjustment: 10
Effective length of query: 497
Effective length of database: 892
Effective search space: 443324
Effective search space used: 443324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
