MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-539F19
Chromosome	5 (Build37)
Map Location	131,227,078 - 131,227,249
singlet/doublet	singlet
Overlap gene	Caln1
Upstream gene	Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik
Downstream gene	Wbscr17, Auts2
Link	Open Mouse BAC browser

Click to get alignment info.

name	Gbas (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14467 MGI:1278343
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Psph (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100678 MGI:97788
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cct6a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12466 MGI:107943
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100038887 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038887
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sumf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67902 MGI:1915152
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Phkg1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18682 MGI:97579
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Chchd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14004 MGI:1261428
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2410018M08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71970 MGI:1919220
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930579G22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69034 MGI:1923099
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vkorc1l1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69568 MGI:1916818
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Gusb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110006 MGI:95872
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Asl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109900 MGI:88084
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Crcp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12909 MGI:1100818
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tpst1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22021 MGI:1298231
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kctd7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212919 MGI:2442265
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rabgef1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56715 MGI:1929459
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	0610007L01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71667 MGI:1918917
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG625540 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:625540 MGI:3646314
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Sbds (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66711 MGI:1913961
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tyw1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100929 MGI:2141161
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	A330070K13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381673 MGI:2685897
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Caln1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140904 MGI:2155987
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wbscr17 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212996 MGI:2137594
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Auts2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319974 MGI:1919847
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gbas (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369366 GeneID:14467 MGI:1278343
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glioblastoma amplified sequence transcript_id : NM_008095.3

name	Psph (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372741 GeneID:100678 MGI:97788
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphoserine phosphatase transcript_id : NM_133900.3

name	Cct6a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753323 GeneID:12466 MGI:107943
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chaperonin subunit 6a (zeta) transcript_id : NM_009838.1

name	LOC100038887 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254606 GeneID:100038887
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC100038887 transcript_id : XM_001471643.1

name	Sumf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381003 GeneID:67902 MGI:1915152
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sulfatase modifying factor 2 transcript_id : NM_026445.2

name	Phkg1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:77404187 GeneID:18682 MGI:97579
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphorylase kinase gamma 1 transcript_id : NM_011079.2

name	Chchd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369831 GeneID:14004 MGI:1261428
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil-helix-coiled-coil-helix domain containing 2 transcript_id : NM_024166.5

name	2410018M08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134053872 GeneID:71970 MGI:1919220
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2410018M08 gene transcript_id : NM_183088.2

name	Vkorc1l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47717110 GeneID:69568 MGI:1916818
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vitamin K epoxide reductase complex, subunit 1-like 1 transcript_id : NM_027121.3

name	Vkorc1l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47717108 GeneID:69568 MGI:1916818
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vitamin K epoxide reductase complex, subunit 1-like 1 transcript_id : NM_001001327.1

name	Gusb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754097 GeneID:110006 MGI:95872
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glucuronidase, beta transcript_id : NM_010368.1

name	Asl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353065 GeneID:109900 MGI:88084
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : argininosuccinate lyase transcript_id : NM_133768.3

name	Crcp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131170 GeneID:12909 MGI:1100818
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcitonin gene-related peptide-receptor component protein transcript_id : NM_007761.2

name	Tpst1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305590 GeneID:22021 MGI:1298231
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein-tyrosine sulfotransferase 1 transcript_id : NM_013837.1

name	Kctd7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802772 GeneID:212919 MGI:2442265
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium channel tetramerisation domain containing 7 transcript_id : NM_172509.2

name	Rabgef1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982702 GeneID:56715 MGI:1929459
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAB guanine nucleotide exchange factor (GEF) 1 transcript_id : NM_019983.2

name	0610007L01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487090 GeneID:71667 MGI:1918917
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 0610007L01 gene transcript_id : NM_001081394.1

name	EG625540 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94375698 GeneID:625540 MGI:3646314
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : predicted gene, EG625540 transcript_id : XM_890123.2

name	Sbds (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956137 GeneID:66711 MGI:1913961
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Shwachman-Bodian-Diamond syndrome homolog (human) transcript_id : NM_023248.1

name	Tyw1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371853 GeneID:100929 MGI:2141161
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) transcript_id : NM_178897.3

name	Tyw1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62899040 GeneID:100929 MGI:2141161
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) transcript_id : NM_001015876.1

name	Caln1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10946703 GeneID:140904 MGI:2155987
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calneuron 1 transcript_id : NM_021371.1

name	Wbscr17 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110347503 GeneID:212996 MGI:2137594
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Williams-Beuren syndrome chromosome region 17 homolog (human) transcript_id : NM_145218.3

name	Auts2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486585 GeneID:319974 MGI:1919847
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : autism susceptibility candidate 2 transcript_id : NM_177047.3

name	Gbas (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75832137 CCDS:CCDS19698.1 GeneID:14467 MGI:1278343
definition	GO_component : GO:0005739 - mitochondrion [Evidence ISS] [Evidence IDA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation product : glioblastoma amplified protein_id : NP_032121.2

name	Psph (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527116 CCDS:CCDS19699.1 GeneID:100678 MGI:97788
definition	GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0016791 - phosphoric monoester hydrolase activity [Evidence IEA] GO_process : GO:0008652 - amino acid biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : phosphoserine phosphatase protein_id : NP_598661.1

name	Cct6a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753324 GeneID:12466 MGI:107943
definition	GO_component : GO:0005832 - chaperonin-containing T-complex [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA] GO_process : GO:0044267 - cellular protein metabolism [Evidence IEA]; GO:0006457 - protein folding [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy function : CCT is a molecular chaperone which assists the folding of proteins in eukaryotic cytosol note : chaperonin containing TCP-1; snoRNA MBI-79 product : chaperonin subunit 6a (zeta) protein_id : NP_033968.1

name	LOC100038887 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254607 GeneID:100038887
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001471693.1

name	Sumf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:77377292 CCDS:CCDS19700.1 GeneID:67902 MGI:1915152
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IPI] codon_start : 1 product : sulfatase modifying factor 2 protein_id : NP_080721.1

name	Phkg1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755054 CCDS:CCDS19701.1 GeneID:18682 MGI:97579
definition	GO_component : GO:0005964 - phosphorylase kinase complex [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0005978 - glycogen biosynthesis [Evidence IEA]; GO:0005977 - glycogen metabolism [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : phosphorylase kinase gamma 1 protein_id : NP_035209.1

name	Chchd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18079334 CCDS:CCDS19702.1 GeneID:14004 MGI:1261428
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : ethanol induced 6 product : coiled-coil-helix-coiled-coil-helix domain containing 2 protein_id : NP_077128.2

name	2410018M08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134053873 GeneID:71970 MGI:1919220
definition	codon_start : 1 product : hypothetical protein LOC71970 protein_id : NP_898911.2

name	Vkorc1l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46309457 CCDS:CCDS19703.1 GeneID:69568 MGI:1916818
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_process : GO:0042373 - vitamin K metabolism [Evidence ISS] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : vitamin K epoxide reductase complex, subunit 1-like 1 isoform 1 protein_id : NP_081397.1

name	Vkorc1l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47717109 CCDS:CCDS19704.1 GeneID:69568 MGI:1916818
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_process : GO:0042373 - vitamin K metabolism [Evidence ISS] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : vitamin K epoxide reductase complex, subunit 1-like 1 isoform 2 protein_id : NP_001001327.1

name	Gusb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754098 CCDS:CCDS19705.1 GeneID:110006 MGI:95872
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA] GO_function : GO:0004566 - beta-glucuronidase activity [Evidence IDA]; GO:0043169 - cation binding [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : adipose storage deficiency; beta-glucuronidase product : glucuronidase, beta protein_id : NP_034498.1

name	Asl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526986 GeneID:109900 MGI:88084
definition	GO_process : GO:0008652 - amino acid biosynthesis [Evidence IEA] codon_start : 1 product : argininosuccinate lyase protein_id : NP_598529.1

name	Crcp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6681011 CCDS:CCDS19706.1 GeneID:12909 MGI:1100818
definition	GO_component : GO:0001669 - acrosome [Evidence IDA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0007218 - neuropeptide signaling pathway [Evidence IDA] codon_start : 1 product : calcitonin gene-related peptide-receptor component protein protein_id : NP_031787.1

name	Tpst1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305591 GeneID:22021 MGI:1298231
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008476 - protein-tyrosine sulfotransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 function : O-sulfation of tyrosine residues within acidic motifs of polypeptides product : protein-tyrosine sulfotransferase 1 protein_id : NP_038865.1

name	Kctd7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369698 CCDS:CCDS19707.1 GeneID:212919 MGI:2442265
definition	GO_function : GO:0005216 - ion channel activity [Evidence IEA] codon_start : 1 product : potassium channel tetramerisation domain containing 7 protein_id : NP_766097.1

name	Rabgef1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910316 CCDS:CCDS19708.1 GeneID:56715 MGI:1929459
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006897 - endocytosis [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : Ras negative regulator Rabex-5/Rin2; Rab5 exchange factor product : RAB guanine nucleotide exchange factor (GEF) 1 protein_id : NP_064367.1

name	EG625540 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82899627 GeneID:625540 MGI:3646314
definition	codon_start : 1 product : hypothetical protein protein_id : XP_895216.1

name	0610007L01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487091 GeneID:71667 MGI:1918917
definition	codon_start : 1 product : hypothetical protein LOC71667 protein_id : NP_001074863.1

name	Sbds (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956138 CCDS:CCDS19710.1 GeneID:66711 MGI:1913961
definition	GO_function : GO:0003674 - molecular_function [Evidence IEA] [Evidence ND] codon_start : 1 product : Shwachman-Bodian-Diamond syndrome homolog protein_id : NP_075737.1

name	Tyw1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30725740 CCDS:CCDS19711.1 GeneID:100929 MGI:2141161
definition	GO_component : GO:0009279 - outer membrane (sensu Proteobacteria) [Evidence IEA] GO_function : GO:0009055 - electron carrier activity [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0003958 - NADPH-hemoprotein reductase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; radical S-adenosyl methionine and flavodoxin domains 1 product : radical S-adenosyl methionine and flavodoxin domains 1 isoform 2 protein_id : NP_849228.1

name	Tyw1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62899041 CCDS:CCDS19712.1 GeneID:100929 MGI:2141161
definition	GO_component : GO:0009279 - outer membrane (sensu Proteobacteria) [Evidence IEA] GO_function : GO:0009055 - electron carrier activity [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0003958 - NADPH-hemoprotein reductase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; radical S-adenosyl methionine and flavodoxin domains 1 product : radical S-adenosyl methionine and flavodoxin domains 1 isoform 1 protein_id : NP_001015876.1

name	Caln1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946704 CCDS:CCDS19714.1 GeneID:140904 MGI:2155987
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005509 - calcium ion binding [Evidence ISS] [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : calneuron 1 protein_id : NP_067346.1

name	Wbscr17 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32401429 GeneID:212996 MGI:2137594
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004653 - polypeptide N-acetylgalactosaminyltransferase activity [Evidence IEA]; GO:0005529 - sugar binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] codon_start : 1 note : UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase; protein-UDP acetylgalactosaminyltransferase-like protein 3 product : UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase-like 3 protein_id : NP_660253.2

name	Auts2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486586 GeneID:319974 MGI:1919847
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : unclassified translation discrepancy note : autism susceptibility candidate 2-like product : autism susceptibility candidate 2 protein_id : NP_796021.2

name	4930579G22Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149254608 GeneID:69034 MGI:1923099
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930579G22 gene transcript_id : XR_035134.1

name	A330070K13Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149254616 GeneID:381673 MGI:2685897
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA A330070K13 gene transcript_id : XR_035246.1

clone name	MSMg01-365O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-203F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447K17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-053E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-183D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-322O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-062M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206I05
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-539F19.T7 (MSMg01no539_f19.b1)	MSMg01-539F19.TJ (MSMg01no539_f19.g1)
ACC	AG605872	AG605873
length	789	696
length of high quality (start - end)	664 (45 - 708)	179 (89 - 267)
definition	CHROMAT_FILE: MSMg01no539_f19.b1 PHD_FILE: MSMg01no539_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:17 2005	CHROMAT_FILE: MSMg01no539_f19.g1 PHD_FILE: MSMg01no539_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:17 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TTAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA ATTCTCTATTTACCTCTGTACCCCATTTTTAATTGGGTTATTTGGGTTTC TTTGGAGGTTAACTTCTTGAGTCCTTTATATATTTTAGATATTAGTCCTC TGTTGAATGTAGGGTTAGTGAAGACTTTTTTTTCCCAACTTGTAGGTTGC CAATTTGTCTTATTGATGGTGTCTTTGCCTTACAGAAGCTTTTCAGTTTC ATGGGTCTCATTTATCAATTGTTGCTTTTAGAGCCTGAGCCATTGGTGCT CTGTTTGGGGAATTTTACCCTGTGCCAATGAGTTCAAGGCTCTTTCCTAC TTGTTCTTCTTTTAGAGTCAGTGTATCTGCTTTTATGTTGAGGTCCTTGA TCTACTGGGACTTGAGGTTTGTTAAGGGTGATAAATTAGGGAAACAACAC CCTTCACAATAGCTACAACTAGTATAAAATATCATGGTGTAACTCTTCCC AAGCAAGAGAAAGATCTGTGTGACAAGAACTTCAAATCCCTAAAAAAAAT AAATCAAAAAAGACACCAGAAGATGGAATGTTCTCTCATACTCATGGATT GGTAGGGTTAACAGTGAAAATGGCCATTTTATCAAAAGCAATCTACAGAT TCATGCAATCCCCATCAAAATTTGAACAATTTTGAAAAGAGCAATTCTCA ACTTCATATGGAAAACCAAAACAAAACAAAAAAACCCCAGGATAGCCAAA ACAATTCTCAATAATAAAAGAACTTCCAGGTGATCACTA	CTTTTTTTTTCTTCATTGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAGTGAGGGT CTGAGCATGTGGCTCAGTGGTAGAGCATGCATCTATGGAAAGCTTGGATA AACAGGAAACCCCTAGGGAAAGATATTTCAGCTGAAGAGATAATCAATTT CCATAGCAGGTACAAATTAAATTACTATACTGGCTTCATTTTTTTGGAAA TCTTTTCTTTATTTTGTTTGGTTGTTTGTTTGGTTGTTTTTGGTTTTTCG AGACAGGGTTTTCTGGTATAGCCCTGGGCGGTCCCTGGAAACTTCCTTTT GTAAACAAGGCCGGGCCTCCGAATTAAAAAAATTTGCCGTGGCCTCTGGC CCCCCCAAAGGGTTGGGGATAAAAGGGGGGGGCGCCCCCCCACCCGGGGT CGAAAAATTTTTTTTTTTTAAGGGGAAAACGGGGGTGAAAACCTCCCCTC CCCCCCCGGGAAACAAAAAAAAGCGCCAAAAGGGGCCCTTATATTTTTCT TCTGCGGTGTACTTGGCGGGCCTTTGGTAGAAACTTTTTTCGCTGGGAAA AAAAAATATAGTGGGGTGAAGAGAGAAAATTTTTCTCCCCCCCCCGCTTT TTTTTTTTTTTGTGGCGTTGGGGCCACAAAAACATATATTTTTGGG
quality values	Open. Hide. 8 8 8 8 8 8 8 10 9 8 8 11 11 11 23 26 30 30 20 23 24 33 33 37 30 30 31 23 23 10 15 6 7 6 6 8 11 18 32 28 29 29 29 30 32 47 57 57 36 35 35 31 31 31 50 47 47 41 30 25 11 11 11 11 22 30 41 41 47 47 59 33 33 36 36 50 50 57 57 57 57 53 53 53 53 53 53 53 57 57 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 59 59 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 68 68 68 68 57 57 57 57 57 57 59 68 59 59 57 57 57 59 57 57 57 57 57 57 57 68 68 68 54 54 54 54 54 54 57 68 68 57 57 54 54 54 57 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 48 48 48 59 59 59 50 48 47 41 41 39 37 36 35 36 31 37 35 37 39 41 41 40 43 37 37 39 59 59 48 48 48 48 41 41 41 41 41 41 41 36 36 38 39 37 31 34 44 44 37 37 44 37 37 41 41 41 41 46 46 46 59 41 41 41 32 27 26 26 26 32 37 43 43 39 30 30 30 22 29 35 36 44 41 37 37 41 43 41 41 41 37 39 32 31 31 35 35 37 37 31 26 32 36 37 47 59 41 37 37 37 31 29 29 29 29 29 32 39 34 32 35 31 32 34 37 43 39 21 12 11 12 10 10 22 30 30 28 27 29 24 31 31 28 28 28 31 28 24 15 15 13 24 22 20 11 10 10 16 10 12 11 14 14 20 11 8 8 8 9 10 13 11 11 16 17 23 19 16 9 9 9 12 16 20 19 12 13 13 24 19 19 19 15 18 9 11 11 11 14 17 18 16 15 17 18 15 15 14 14 10 12 18 10 10 10 14 14 22 17 10 9 8 8 8 8 10 10 10 10 15 15 12 12	Open. Hide. 8 8 17 19 15 12 10 11 8 8 8 8 9 8 8 6 6 6 8 10 8 8 8 8 9 9 17 14 19 21 27 37 32 29 21 23 19 14 14 19 24 14 23 11 6 6 6 6 7 8 15 9 10 10 27 25 37 37 30 32 34 34 37 30 30 39 39 59 59 59 29 24 12 10 9 10 14 17 23 31 43 44 37 31 31 37 41 41 47 47 41 41 48 48 53 53 53 53 53 50 50 57 59 57 48 48 57 57 53 53 57 57 42 36 42 29 36 42 57 57 57 68 57 57 53 48 50 50 50 43 47 47 47 47 57 57 57 57 57 53 59 59 50 50 46 37 37 37 37 32 32 36 39 37 37 37 33 33 33 37 37 37 47 43 41 37 41 44 37 37 29 33 28 28 28 33 39 42 42 42 39 39 44 37 31 31 37 30 30 25 28 28 33 37 37 47 48 48 48 41 41 37 37 37 37 39 39 38 34 32 35 37 35 31 31 39 39 39 37 32 31 37 37 37 59 59 47 47 39 32 32 28 28 41 26 34 35 27 25 26 31 24 22 22 22 22 24 30 31 20 16 18 23 23 21 21 11 11 11 21 23 37 37 18 19 11 11 8 11 11 8 8 8 14 11 13 11 13 11 9 11 8 10 8 11 9 9 9 21 12 15 15 12 12 9 19 15 16 9 10 11 12 11 11 11 9 8 8 8 9 15 13 10 9 9 9 10 8 8 8 8 8 10 8 15 16 16 11 8 8 8 8 8 8 8 8 8 12 19 13 12 8 10 10 10 14 11 12 11 8 8 8 8 10 9 8 8 8 9 8 8 10 8 8 8 7 6 6 6 6 6 9 10 10 10 8 12 16 20 15 14 9 9 10 10 10 6 6 6 6 6 7 8 8 8 8 8 9 8 12 16 15 9 9 9 8 8 8 9 8 8 6 6 8 8 8 8 13 10 10 10 12 10 11 11 15 14 19 24 22 15 8 8 8 8 10 18 21 17 10 8 8 8 8 8 8 8 8 8 10 10 9 14 20 17 13 10 10 10 13 16 19 18 18 25 22 21 22 10 11 11 9 11 14 14 13 8 8 6 6 6 6 7 11 6 6 6 11 12 11 9 6 6 6 6 8 8 6 7 6 8 8 15 16 10 8 8 6 7 6 8 8 8 8 8 8 8 10 16 11 11 6 8 7 7 8 8 10 16 11 11 15 12 11 9 9 9 15 17 11 11 10 10 10 12 12 9 9 9 9 8 6 6 6 6 10 8 8 8 8 8 11 13 8 8 8 8 8 8 8 12 12 13 12 8 8 6 6 6 6 6 6 8 6 7 10 8 9 8 8 6 6 8 8 8 8 6 6 7 8 15 18 25 19 17 10 8 6 6 6 6 6 6 10 13 6 6 8 8 6 6 6 6 6 8 10 10 10 11 10 12 11 16 10 10 10 9 9 9 10 15 10 9 8 8 8 8 8 10 22 17 16 12 12 19 10 9 10 8 10 8 8 8 8 8 9 9 14 9 10 9 9 10 10 10 10 10 10 11 9 9 8 8 8 6 6 6 6 6 6 13 11 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no539_f19.g1 MSMg01no539_f19.g1 CHROMAT_FILE:
MSMg01no539_f19.g1 PHD_FILE: MSMg01no539_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:17 2005
         (179 letters)



>mm_chr5_131226840_131227417
          Length = 578

 Score =  319 bits (165), Expect = 6e-92
 Identities = 171/173 (98%), Gaps = 1/173 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccagtgagggtctgagcatgtggctcagtggtagagcatgcatctatggaaagcttgga 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cccagtgagggtctgagcgtgtggctcagtggtagagcatgcatctatggaaagcttgga 351

                                                                       
Query: 61  taaacaggaaacccctagggaaagatatttcagctgaagagataatcaatttccatagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 taaacaggaaacccctagggaaagatatttcagctgaagagataatcaatttccatagca 291

                                                                
Query: 121 ggtacaaattaaattactatactggcttcatttttttggaaatcttttcttta 173
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 290 ggtacaaattaaattactatactggcttcatttttt-ggaaatcttttcttta 239


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 578
Length adjustment: 8
Effective length of query: 171
Effective length of database: 570
Effective search space:    97470
Effective search space used:    97470
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information