TTTTTTGCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTT
ATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATA
TTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTT
GGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTG
GAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCA
TTGTTGTTCTGTTCAGGAATTTTTTCCCTGTGCCCATATCTTCAAGGCTT
TTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAG
TTCTTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGAT
CGATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAGTTG
TTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAA
GATCAAGTGACCATAGGTGTATGGGTTCATTTCTGGGTCTTCAATTCTGT
TCCATTGGTCTAGTTGTCTTTCTCTATACCAGTACCATGCAGTTTTTACC
ACAATTGCTCTGTAGTAAAGCTTTAGGTCAGTCATGGTGATTCCACCAGT
GGTTCTTTTATCCTTGGCAGGAGTT

TTTATTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACACCTTAAGAGCTAC
ATAACGAGATCCTGTCTTTAAATGAAACAAACAAAAGAGGCTGAAGTTAA
GAGAGAATTATTAATTTGCCTGAAGTAAATGGTGTCCTGATGGTCAAAGT
CCATTGTATATTGTTCCAGAGGTCTGAGTGAGTTCTAGGTAGGTACATCT
TTGTTTTGCTGAAAAAAAAACATATTTGAGGCACATACATACTATAATCG
TATTAAAATATATATTAAGATATGCATTCAGAAAAAATGAATATACTCAT
ATAAGCAATATCTGCAATAGAGATATAAAAAGTAATTTGCTTTAAGAACC
ATCTTGTTTAAAATTAGCCCTTTGTTTCCACTTCAAATAACTACTAGTCT
GCTTTTCATTTACTGATAATATTATATTTTATGGCATTATTGCATAACTA
TAGNATTGGTGTATGTGTGTCTGTATGTATGTGTGTGTGTGTGTATGTGT
GTGCATATAAACGTATTACTAATGTCAAAAGTCATTAAATGTAGGTTTTC
AAATGCTTACTGGAATGTTCATTTTTTTTCTTCCCNGGAAAGTGGTTCCA
AGGGGTATTTTTTTTTTTTTTCGCCAAATTTTGGAAAAAGGGAANTTTCC
CCCTTATTAAAAATTTTCTTTGGGA

Query= MSMg01no540_b12.g1 MSMg01no540_b12.g1 CHROMAT_FILE:
MSMg01no540_b12.g1 PHD_FILE: MSMg01no540_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:16 2005
         (409 letters)



>mm_chr5_12988850_12989663
          Length = 814

 Score =  688 bits (356), Expect = 0.0
 Identities = 398/414 (96%), Gaps = 5/414 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacaccttaagagctacataacgagatcctgtctttaaatgaaacaaacaaaagaggctg 60
           |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 614 tacaccttgagagctacataacgagatcctgtctttaaaagaaacaaacaaaagaggctg 555

                                                                       
Query: 61  aagttaagagagaattattaatttgcctgaagtaaatggtgtcctgatggtcaaagtcca 120
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 554 aagttaagagacaatgattaatttgcctgaagtaaatggtgtcctgatggttaaagtcca 495

                                                                       
Query: 121 ttgtatattgttccagaggtctgagtgagttctaggtaggtacatctttgttttgctgaa 180
           ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 494 ttgtatattgttccagatgtctgagtgagttctaggtagatacatctttgttttgccgaa 435

                                                                       
Query: 181 aaaaaaa----catatttgaggcacatacatactataatcgtattaaaatatatattaag 236
           |||||||    |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 434 aaaaaaaaaaacatatttgaggcacatacatactataatcgtattaatatatatattaag 375

                                                                       
Query: 237 atatgcattcagaaaaaa-tgaatatactcatataagcaatatctgcaatagagatataa 295
           |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 374 atatgcattcagaaaaaaatgaatatactcatataagcaatatctgcaatagaaatataa 315

                                                                       
Query: 296 aaagtaatttgctttaagaaccatcttgtttaaaattagccctttgtttccacttcaaat 355
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 314 aaagtaatttgctttaagaaccattttgtttaaaattagccctttgtttccacttcaaat 255

                                                                 
Query: 356 aactactagtctgcttttcatttactgataatattatattttatggcattattg 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aactactagtctgcttttcatttactgataatattatattttatggcattattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 814
Length adjustment: 9
Effective length of query: 400
Effective length of database: 805
Effective search space:   322000
Effective search space used:   322000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)