Query= MSMg01no540_j02.b1 MSMg01no540_j02.b1 CHROMAT_FILE:
MSMg01no540_j02.b1 PHD_FILE: MSMg01no540_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:53 2005
(582 letters)
>mm_chr5_31316616_31317597
Length = 982
Score = 944 bits (488), Expect = 0.0
Identities = 537/568 (94%), Gaps = 26/568 (4%)
Strand = Plus / Plus
Query: 16 gaattccaggacagtcaggggatacacagagaaacctggtctcaaacacacacacacaca 75
|||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 240 gaattccaggacagccaggggatacacagagaaacctggtctcaaacaca---------- 289
Query: 76 cacacacacacacacacacacacacacacacacacacacacacacacagaaagtctggtg 135
| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 -------------a-acacacacacacacacacacacacacacacacagaaagtctggtg 335
Query: 136 ttagtatctccttagtataacacaaaataatgtaaacccttctgggtttagtggcaccag 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttagtatctccttagtataacacaaaataatgtaaacccttctgggtttagtggcaccag 395
Query: 196 ggaatttatgcatattaattttggcctatgctacgttcttatattaactaagatggtgat 255
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ggaatttatgcgtattaattttggcctatgctacgttcttatattaactaagatggtgat 455
Query: 256 gtcacatttgccatctttacttcattagacaagatgggccaagtgttgttgcctccatct 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gtcacatttgccatctttacttcattagacaagatgggccaagtgttgttgcctccatct 515
Query: 316 taatgaggtcatcagccaagatagaggcaaagcacgtggttactttttattcatgaggta 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 taatgaggtcatcagccaagatagaggcaaagcacgtggttactttttattcatgaggta 575
Query: 376 gctttataataaattgttcctcagggatctacacataacacagactaaatag-aagcaac 434
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 576 gctttataataaattgttcctcagggatctacacataacacagactaaataggaa-caac 634
Query: 435 tccactcatttctttttaacagacacttcaggttggtagggatataggagatggttccta 494
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 635 tccactcatttctttttaacagacacttcaggttggtagggatataggagatggctccta 694
Query: 495 gaaacagaggaaggaatccatggactcaacccaaggaagtgctgtgaacatcaagagctg 554
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 695 gaaacagaggaaggaatccatgggctcaacccaaggaagtgctgtgaacatcaagagctg 754
Query: 555 tcgtctggatcttattttaacctttcct 582
|| |||||||||||||||||||||||||
Sbjct: 755 tcatctggatcttattttaacctttcct 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_j02.g1 MSMg01no540_j02.g1 CHROMAT_FILE:
MSMg01no540_j02.g1 PHD_FILE: MSMg01no540_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:53 2005
(350 letters)
>mm_chr5_31486248_31486997
Length = 750
Score = 584 bits (302), Expect = e-171
Identities = 334/350 (95%), Gaps = 9/350 (2%)
Strand = Plus / Minus
Query: 1 tcatcatagatgtaacaattaccaaaacttgccactttttgtttcctttgaagcatggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tcatcatagatgtaacaattaccaaaacttgccactttttgtttcctttgaagcatggtc 423
Query: 61 tcacagtcttgaactctgtagctggtgctagccttgaactcaggctcatcccactaccac 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 422 tcacagtcttgaactctgtagctggtcctagccttgaactcaggctcatcccactaccac 363
Query: 121 ttttaaagtgctgagtgagatatgccacaaactggcttctgtttaattttattacattta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 362 ttttaaagtgctgagtgagatatgccacaaactggcttctgtttaattttattacattca 303
Query: 181 cttgtgtggtgaggcacaggaagcagttagggaacaactttctctctccagcccttagat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 302 cttgtgtggtgaggcacaggaagcagttagggaacaactttctctctccagcccttaggt 243
Query: 241 ttttccttgctgaagttactgtatggcaaatcccaggcactaattttttttttttttttt 300
|||||||||||||||||||| |||||||||||||| |||||| |||||||||
Sbjct: 242 ttttccttgctgaagttactatatggcaaatcccaagcacta---------ttttttttt 192
Query: 301 ttttttttttttttttgggttttggttttcgagacagggtttttctgtat 350
|||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 191 ttttttttttttttttggtttttgtttttcgagacagggtttttctgtat 142
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space: 252681
Effective search space used: 252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
