BAC Information

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BAC

Clone NameMSMg01-540K09
Chromosome5 (Build37)
Map Location 127,141,677 - 127,142,290
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem132b, EG231736, LOC100039178, LOC665760
Downstream geneLOC100040327, Tmem132c, Slc15a4, Glt1d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540K09.T7 (MSMg01no540_k09.b1)MSMg01-540K09.TJ (MSMg01no540_k09.g1)
ACCAG606850AG606851
length7431,407
length of high quality
(start - end)
614 (76 - 689)---
definitionCHROMAT_FILE: MSMg01no540_k09.b1 PHD_FILE: MSMg01no540_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:59 2005CHROMAT_FILE: MSMg01no540_k09.g1 PHD_FILE: MSMg01no540_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGAGTGTTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTCATTGAAAGAATGATGGATAGCTCTAGACATAGGAA
AAGAAAAAAAGAAAAAGGAAGTTCACCCCAGAACATCCCAAAAATTGCAA
AGTGTTTTGAACTGAATGAAAATGAAATACAATGCATTAAATATGTGTGA
GGCTGTCGCTCCCTCTCACCAGAGGCAGACCAATCTCATCCATGGCTAAC
ATCATATCCTAGTTAGACTGAAAATTAAAAAAAAAAAAAATACTAGGGAG
GACTTGGATAAATGAGGATTTTCATATGCTATTGGGAAAGCCAATTAGAG
CAACTGTTATGGAAAATTAAAAATATAGCTACCATGATGACCAGCAATCC
TCTGTGTATGCCTAGAAAAAAAAGAAGTTAATGTGCTGAGGAGACAACTC
CACTCCCCGTTTATTGACCCACTATTCACAAAAGCCAAGATCAAGAATCA
ACCTTGGTGTCCCTCAAGAAAAACCTGGGATAAAGATGTTCCAATGCCCA
GTGTGAGATCCCCTGTGTGGAGGGAGGGAGATACATGAACAGGCTTGCTG
AGTGTCCCCAAAATTGCAGAAAGGACAACAGGTTCTGCTGAGTGTTATGA
TCATTGCAGAAAGGACAGCAGGTTCATGGTTTGTTAAGCTCCAGGATGAC
TGTATTTAGCAACAGTGAATTGAATATTTCAAACTAAGAAGAC
TCTCTCTACAAATACACGCGCGGCGTAGGGNAGAGTGGGGNGGGGGCGGT
GTTTCTCTCTCTTGTCTGGGGTGATTTATTCCGAAATATTAGCGCTGGAT
TATCCGGCGCGCGGGCCGCGCTACAGTCGTGCCCCGCGCCTGTACGCGTA
CTCTGTCCGAAACGATAGTATTTTTAGAGACAGGACATATGTGGATAGCG
AGGTTGTTTGCGTTGGTGTGTTCTCGCCCGAGTATATGGGAGAGGAGGGA
AAATATAAGGAGTAGATCGTTATTTATGTGTATCAAGCGTCACGTGGCGT
TGTGATGCCTCTTTTCGTTTATGCGCGAGCGCTTCGGGCGCAGCTAGTAA
TATACGGTAGATGGTGTGAGTACCGTTCTTGAATTTATTGTCGCACTCTA
CTCACTTCCATTATTGCGCGTGGTTTGGTTTTGTGATGTGAGTGCGACGC
GTTATGTTGTATGTAGAGTGGACAGATCGCAATAGAGAAGATACCACGGG
TTCAATTGTGAAGAATGAACAACGAGCCGACATCCGGCGCGCATACGCAC
ACCATATGAAGGAGAGACACTATTGGCACGGCTGAGAGTGTAAAGCGCCT
ATATCTCTTATTTNTATTATTCATATTTCGCGTGTATGTGAGTGGTACGC
GCGTCGTCGGTCGTGCGCGCACTTTCTGCGCGATCATTAATTATCTACGA
CTAAAGATAAAGCTGGTTAGCGCGCGAATGAATCTGATTGGACGTGCTCA
ATATGAAACAAACCAATACGGATCGGCATACATGCGTTCGCGCTTCGCAG
TGTGACTGGTCTCGACGTCGACGATGGAATAGTGAATCACCTGTATTCAT
CGATCTAGTTTGCCACAATATGGCGTTCGGTTGCTTATGTCGAATATATG
ATTCTGCGAGAGTTATTGCACTGACTCAAGGAGACAGTGTGCTGTACGAG
GTGGCGCGTGCGCGCGTGGATTTGACATGTGTGTCTATGCTGTGCGGTTN
CGACGTGTGTGTCTGCCTGTGTGCGCTGTGTACGCATATAATACATACTG
AGTCAGACTGATCATGTTCGCATGACATAACGTCTCGATATGATCATGCG
AACTAGGACTCATACGTACATCGACGATATCTGTACGTGTGCGCGCGCAC
AGAGCGAGGAGTAGAAGTATGGCAGACGTCATATAAGATGTTGTGCGACC
ACCGCTCTTCTCTCTATGCGGCGTGTTATCTGCCCATATAGGTATATAGT
GATGCACGCTCACAACACACAATCTTATTGCATATATATTATCATCAATA
ATGTATATGATGCTACTCACAACTACAATATGATGATTAGATATCGATTC
TTGGATCNTATTCTGTCGGTAGTATTGCGCGTCATTACACTGCTCTAGTA
CTATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_k09.b1 MSMg01no540_k09.b1 CHROMAT_FILE:
MSMg01no540_k09.b1 PHD_FILE: MSMg01no540_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:59 2005
         (614 letters)



>mm_chr5_127141477_127142490
          Length = 1014

 Score = 1151 bits (595), Expect = 0.0
 Identities = 610/615 (99%), Gaps = 2/615 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatggatagctctagacataggaaaagaaaaaaagaaaaaggaagttcaccccagaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatggatagctctagacataggaaaagaaaaaaagaaaaaggaagttcaccccagaaca 260

                                                                       
Query: 61  tcccaaaaattgcaaagtgttttgaactgaatgaaaatgaaatacaatgcattaaatatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccaaaaattgcaaagtgttttgaactgaatgaaaatgaaatacaatgcattaaatatg 320

                                                                       
Query: 121 tgtgaggctgtcgctccctctcaccagaggcagaccaatctcatccatggctaacatcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 321 tgtgaggctgtcgctccctctcaccagaggcagaccaatctcatccatggccaacatcgt 380

                                                                       
Query: 181 atcctagttagactgaaaattaaaaaaaaaaaaaatactagggaggacttggataaatga 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 atcctagttagactgaaaattaaaaaaaaaaaaa-tactagggaggacttggataaatga 439

                                                                       
Query: 241 ggattttcatatgctattgggaaagccaattagagcaactgttatggaaaattaaaaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggattttcatatgctattgggaaagccaattagagcaactgttatggaaaattaaaaata 499

                                                                       
Query: 301 tagctaccatgatgaccagcaatcctctgtgtatgcctagaaaaaaaa-gaagttaatgt 359
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 500 tagctaccatgatgaccagcaatcctctgtgtatgcctagaaaaaaaaagaagttaatgt 559

                                                                       
Query: 360 gctgaggagacaactccactccccgtttattgacccactattcacaaaagccaagatcaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctgaggagacaactccactccccgtttattgacccactattcacaaaagccaagatcaa 619

                                                                       
Query: 420 gaatcaaccttggtgtccctcaagaaaaacctgggataaagatgttccaatgcccagtgt 479
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 620 gaatcaaccttggtgtccctcaagaaaaacctgggataaagatattccaatgcccagtgt 679

                                                                       
Query: 480 gagatcccctgtgtggagggagggagatacatgaacaggcttgctgagtgtccccaaaat 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gagatcccctgtgtggagggagggagatacatgaacaggcttgctgagtgtccccaaaat 739

                                                                       
Query: 540 tgcagaaaggacaacaggttctgctgagtgttatgatcattgcagaaaggacagcaggtt 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgcagaaaggacaacaggttctgctgagtgttatgatcattgcagaaaggacagcaggtt 799

                          
Query: 600 catggtttgttaagc 614
           |||||||||||||||
Sbjct: 800 catggtttgttaagc 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)