NCCCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATGCAGTTGATATCCTTCTTAACAGTCTGCTTTACGGGA
ACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCC
CTGCGCCGGTCCCCAGTTTTCTTGTATTTTCTCGTCCCAGGATTTTCTCG
TCCCGGAATTTCTCGTCCCGGATTTCAGCACCAATTCTTAATTGCGTTCT
CACGCCCGGCCAGGAAAGACGCAACAAACCAGAATCTTCTGCGGCAAAAC
TTTATTGCTTACATCTTTTGGAGCCAGGAGGGCAAGCGCCCAGCGCCCAG
CCCCAAAAACGAAAAGCCCCTTCTATCTTACATCTTTAGGAGCCAGAGCT
CCGGCGCCGCCAAAGCGCAGAGCGCGCTCTATTGTTTACATCTTTAGGCA
GCGAGCGAGCGCAGGGCGCGCAGAGCCAGAGAGATGCCAGCGAGAGAGAA
GAGAATGGCGGAAAAAACCCCCGTCCCCTTTTTAGGAGAGTTATATTTCG
CCTAGGACGCATCACTCCCTGATTGGCTGCAGCCCATGGCCGAGCTGAAG
TTCACGGGAAAAGCAGAGTACAAGTAGTCGTAAATACCCTTGGCACATGC
GCAGATTATTTGTTTACCACTTAGAACACAGGATGTCAGCGCCATCTTGT
GACGGCGAATGTGGGGGCGGCTCCCAACAATAACCACATGATCATCTCGT
TAG

TTTTTTTCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTTTCCATGAAG
AAAACTGACGTTTATATTTTAATCAAAACTATGCTAAAATAAGTGGCTAT
CATTCTATGATATAAATAGAAGTCATATTAGATCTTCCTCTAGTCCTTGA
CACAGCACTTCTAAATGAGGAATTCATTTGTCATTCTAAAAAATCCTTTA
AATCCTACATGAATATACCTGGAGTTGTTTACCTGTCAGCAATAGGATGG
GCACTCATTGCCAGAAATATTAAGTCATGGTTAGAAAGAAGCTGGAGATT
TTTGGTCTACTTGGTTACTTACACACACCTTAGGTGAGGAAGAAAGATAC
GGAGTTAAGTTAACTCAAGGGGAATTATTTACTCAGTCACATCTACTTAA
TGACATTAAGGATGTTTAAGTTCCGTAGATGATTCTGTTGAATCAGCTTC
TAGAGTGGACTCACTTATGATGTAAAAAGAAAGCCACACATCAACATTCT
AAGAACAGAAGATCCTGTACACAGAATTCTTCCCAATTTCAGCTTTTGTA
CCTTGTCTTCTAGCTGTTCATTTTCTATCTTTTCTAACAATTCAATCTTG
GTGATTAAATTCTCCTGACTTTTGGGAGCCATGTCCAACCAACTATTGAA
CCAGAAAGGAGGGGCATTGTTGTAGGAACTCCTG

Query= MSMg01no541_a03.g1 MSMg01no541_a03.g1 CHROMAT_FILE:
MSMg01no541_a03.g1 PHD_FILE: MSMg01no541_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:29 2005
         (649 letters)



>mm_chr5_47458186_47459234
          Length = 1049

 Score = 1224 bits (633), Expect = 0.0
 Identities = 645/649 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcttttccatgaagaaaactgacgtttatattttaatcaaaactatgctaaaataagtg 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcttttccatgaagaaaactgacatttatattttaatcaaaactatgctaaaataagtg 260

                                                                       
Query: 61  gctatcattctatgatataaatagaagtcatattagatcttcctctagtccttgacacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctatcattctatgatataaatagaagtcatattagatcttcctctagtccttgacacag 320

                                                                       
Query: 121 cacttctaaatgaggaattcatttgtcattctaaaaaatcctttaaatcctacatgaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacttctaaatgaggaattcatttgtcattctaaaaaatcctttaaatcctacatgaata 380

                                                                       
Query: 181 tacctggagttgtttacctgtcagcaataggatgggcactcattgccagaaatattaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacctggagttgtttacctgtcagcaataggatgggcactcattgccagaaatattaagt 440

                                                                       
Query: 241 catggttagaaagaagctggagatttttggtctacttggttacttacacacaccttaggt 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catggttagaaagaaactggagatttttggtctacttggttacttacacacaccttaggt 500

                                                                       
Query: 301 gaggaagaaagatacggagttaagttaactcaaggggaattatttactcagtcacatcta 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggaagaaagataaggagttaagttaactcaaggggaattatttactcagtcacatcta 560

                                                                       
Query: 361 cttaatgacattaaggatgtttaagttccgtagatgattctgttgaatcagcttctagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttaatgacattaaggatgtttaagttccgtagatgattctgttgaatcagcttctagag 620

                                                                       
Query: 421 tggactcacttatgatgtaaaaagaaagccacacatcaacattctaagaacagaagatcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggactcacttatgatgtaaaaagaaagccacacatcaacattctaagaacagaagatcc 680

                                                                       
Query: 481 tgtacacagaattcttcccaatttcagcttttgtaccttgtcttctagctgttcattttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtacacagaattcttcccaatttcagcttttgtaccttgtcttctagctgttcattttc 740

                                                                       
Query: 541 tatcttttctaacaattcaatcttggtgattaaattctcctgacttttgggagccatgtc 600
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatcttttctaacaattcaattttggtgattaaattctcctgacttttgggagccatgtc 800

                                                            
Query: 601 caaccaactattgaaccagaaaggaggggcattgttgtaggaactcctg 649
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caaccaactattgaaccagaaaggaggggcattgttgtaggaactcctg 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)