TTTACACTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTGATCTTTCCAAAACTTTTATCATGAATGGGTGTTGG
ATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTT
GTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATAT
TAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATG
ATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGAT
TTTTGCATCGATATTCATAAGATTGGTCTGAAGTTCTCTATCTTTGTTGG
GTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGT
TGGGTAGAGTACCTTCTATTTCTATTTTGTGAAATAGTTTGTGCAGAACT
GGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATC
TGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTT
CTTTAGGTGATATGGGACTGTTTAGATGGTCAACTTGATCCTGATTCAAC
TTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTC
CAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGTTCTGATGGTGTTTTGGA
TTTCTTCAGGATCTGTTGTTATGTCTCCCTTTTCATTTCTGATTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAAGAATCATGGACTAAGTTTGATGGAAGTAATTTCCTGAGTTT
TTCATCTAGTGTAAGGCAAGCTTGCTGCTTACTATCTAAATCGCTTTTCT
TGAAAGAGAGAATACTGTAAAATGTGATTTCTCAAGGAAAGAGGTGTGAG
TGGCATGCAAGTAAGGCAGGTACAGAGAAAGAGAGTATAAATATTTAAAA
GATTTGTGGAATCAAAGAGAATTCTGGCTCTCTTCCTGCAACACAGATCC
AGTGAGGATAATAACAGACAACACTTAGAACATTATACTAGACATTAGAC
ATTACATTCTTTGCAAGGAGATCTCAGTGTCCTGTAATATGAAGATGTAA
AGGTGGCATTTAAGTTGCAATAGAGATGCCAAGGTATTACCACTGCTAAG
GCTATGAGAAACACCAAGCTGCAGACAGTTTCAGGATACCAGCAACACAA
GTCAGAGGCTATATGTACTGTCAATAGTGGAACTTGAGTTGAAGGTAGTC
CAGAGCTGCTACACAAGTATGTCAAATTCCATTCTATAGTATTCTCAGTT
CAAGGTCTCCCCTTACAAGCAAACCCATATCTTCTTAAGTTGAAGCCTTT
GATGAGAAGGATCTTACATTTAGGGAAACGTTTCTATTGTTCCAGTGACA
AAAATGAGGCTTTTCTTTCTTCTTC

Query= MSMg01no541_d06.g1 MSMg01no541_d06.g1 CHROMAT_FILE:
MSMg01no541_d06.g1 PHD_FILE: MSMg01no541_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:46 2005
         (666 letters)



>mm_chr5_82406086_82407153
          Length = 1068

 Score =  944 bits (488), Expect = 0.0
 Identities = 497/500 (99%), Gaps = 2/500 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaatcatggactaagtttgatggaagtaatttcctgagtttttcatctagtgtaaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagaatcatggactaagtttgatggaagtaatttcctgagtttttcatctagtgtaaggc 441

                                                                       
Query: 61  aagcttgctgcttactatctaaatcgcttttcttgaaagagagaatactgtaaaatgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagcttgctgcttactatctaaatcgcttttcttgaaagagagaatactgtaaaatgtga 381

                                                                       
Query: 121 tttctcaaggaaagaggtgtgagtggcatgcaagtaaggcaggtacagagaaagagagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttctcaaggaaagaggtgtgagtggcatgcaagtaaggcaggtacagagaaagagagta 321

                                                                       
Query: 181 taaatatttaaaagatttgtggaatcaaagagaattctggctctcttcctgcaacacaga 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 320 taaatatttaaaagatttgtggaaacaaagagaattctggctctcttcctgcaacacaga 261

                                                                       
Query: 241 t-ccagtgaggataataacag-acaacacttagaacattatactagacattagacattac 298
           | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcccagtgaggataataacagaacaacacttagaacattatactagacattagacattac 201

                                                                       
Query: 299 attctttgcaaggagatctcagtgtcctgtaatatgaagatgtaaaggtggcatttaagt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 attctttgcaaggagatctcagtgtcctgtaatatgaagatgtaaaggtggcatttaagt 141

                                                                       
Query: 359 tgcaatagagatgccaaggtattaccactgctaaggctatgagaaacaccaagctgcaga 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tgcaatagagatgccaaggtattaccactgctaaggctatgagaaacaccaagctgcaga 81

                                                                       
Query: 419 cagtttcaggataccagcaacacaagtcagaggctatatgtactgtcaatagtggaactt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  cagtttcaggataccagcaacacaagtcagaggctatatgtactgtcaatagtggaactt 21

                               
Query: 479 gagttgaaggtagtccagag 498
           ||||||||||||||||||||
Sbjct: 20  gagttgaaggtagtccagag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1068
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1058
Effective search space:   694048
Effective search space used:   694048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)