Query= MSMg01no541_l03.b1 MSMg01no541_l03.b1 CHROMAT_FILE:
MSMg01no541_l03.b1 PHD_FILE: MSMg01no541_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:27 2005
(696 letters)
>mm_chr5_60311233_60312328
Length = 1096
Score = 1199 bits (620), Expect = 0.0
Identities = 635/642 (98%), Gaps = 4/642 (0%)
Strand = Plus / Minus
Query: 5 gaattccatattaatgtatgaaaattttgttctggatctcattcatttttttcactttat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gaattccatattaatgtatgaaaattttgttctggatctcattcatttttttcactttat 583
Query: 65 gcagctacattatattgcttcggatgctaaaacatattttataccagtattgacatttta 124
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 582 gcagctacattatattgcttcggatactaaaacatattttataccagtattgacatttta 523
Query: 125 tgtagtttttattattttgcaagttgaataaaattacagcatataacctaatgcatttaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgtagtttttattattttgcaagttgaataaaattacagcatataacctaatgcatttaa 463
Query: 185 tttttaaaattctatctttggaataatcttgaatttaacattgtagtatcatttgcctaa 244
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttttaaaaattctatctttggaataatcttgaatttaacattgtagtatcatttgcctaa 403
Query: 245 agccttactgaacatttaccttttctagaatttgctgatatctaatctagagaaggagat 304
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 402 agccttactgaacatttaccttttctagaatttgctgacatctaatctagagaaggagat 343
Query: 305 ccaatgaacctgtgttctcacaagaagatcatggagtggcttttcctactaaaatttgtt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ccaatgaacctgtgttctcacaagaagatcatggagtggcttttcctactaaaatttgtt 283
Query: 365 gacaacatttctattctaaaatttttccagcttgagggatgagaattggcattttgttca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gacaacatttctattctaaaatttttccagcttgagggatgagaattggcattttgttca 223
Query: 425 agttgagaacagggcatggggaggaggttgacaaggaaggaaataaaatgagagacaact 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 agttgagaacagggcatggggaggaggttgacaaggaaggaaataaaatgagagacaact 163
Query: 485 aaaatgaatgcccatgaggagttttaagaaacctaatacagtacagctttctataatgtg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 aaaatgaatgcccatgaggagttttaagaaacctaatacagtacagctttctataatgtg 103
Query: 545 tatacatttgaacatatcataaatggaatcggcacataata----ggggaaatggacccc 600
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 102 tatacatttgaacatatcataaatggaatcggcacataatactttggggaaatggacccc 43
Query: 601 aaagtagccagcaaatgaagcttccagtttcaggaattggtt 642
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 aaagtagccagcaaatgaagcttccagtttcaggaattggtt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space: 744996
Effective search space used: 744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_l03.g1 MSMg01no541_l03.g1 CHROMAT_FILE:
MSMg01no541_l03.g1 PHD_FILE: MSMg01no541_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:27 2005
(665 letters)
>mm_chr5_60250832_60251896
Length = 1065
Score = 1162 bits (601), Expect = 0.0
Identities = 649/665 (97%)
Strand = Plus / Plus
Query: 1 aaaagactaatgtatgtaaaaatgaagcagagaccttgaatgtagactgatcatttgtta 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 aaaagactaatgtatgtaaaaatgaagcagagacattgaatgtagactgatcatttgtta 260
Query: 61 aactgcatgacagcaataggattaatacatcagtcttgagagaaggaaaaaggaataaag 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactgcatgacagcaataagattaatacatcagtcttgagagaaggaaaaaggaataaag 320
Query: 121 gagaaatatacttaatggaggtgacagttgatagtctttaatctaggggaaaatgagcat 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 gagaaatatacttaatggaggtgacagttgatattctttaatctaggggaaaatgagcat 380
Query: 181 caatgaagacaaagaattagtacaggagtaaatggaaattctttactaactaaaatcttt 240
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 caataaagacaaagaattagtacaggagtaaatggaaattctttactaactagaatcttt 440
Query: 241 caagactctgaaagttagtatttagtaattatgtagcattaggaaagacttttgcataga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagactctgaaagttagtatttagtaattatgtagcattaggaaagacttttgcataga 500
Query: 301 aactgaagttttgactcagtttcactttccattttctctggttatttcaaaataaatatg 360
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactgaagttttgactcaatttccctttccattttctctggttatttcaaaataaatatg 560
Query: 361 gtatggtcccacttatcacatagatctgtgccttcctgatctgtttcatttgacatttga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtatggtcccacttatcacatagatctgtgccttcctgatctgtttcatttgacatttga 620
Query: 421 ttagtcctctcccttcacaaattctgtaacatcagggagattcatggagaatattgaata 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttagttctctcccttcacaaattctgtaacatcagggagattcatggagaatattgaata 680
Query: 481 tgttatccaggaataaactaatataaaatattccaaatctgaaagaaaataatagagtaa 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 681 tgttatccaggaataaactaatataaaatattccaaacctgaaagaaaataatagagcaa 740
Query: 541 actatacaaggaattccaccttaaaatattttggttgagtaacactgattgtattgtttt 600
|||||| ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 741 actatataaggaattctaccttaaaaaattttggttgagtaacactgattatattgtttt 800
Query: 601 taaaaactaggtatttaaaaaccaagtttttctataaatgtagataatttctttataaca 660
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 801 taaaaactaggtatttaacaaccaagattttctataaatgtagataatttctttataaca 860
Query: 661 tttta 665
|||||
Sbjct: 861 tttta 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
