Query= MSMg01no541_l16.b1 MSMg01no541_l16.b1 CHROMAT_FILE:
MSMg01no541_l16.b1 PHD_FILE: MSMg01no541_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:30 2005
(670 letters)
>mm_chr5_39937857_39938924
Length = 1068
Score = 1208 bits (625), Expect = 0.0
Identities = 652/667 (97%), Gaps = 12/667 (1%)
Strand = Plus / Minus
Query: 5 gaattccaagccaaccggctacatattaagattctgcctcaataaaaatgataaatggca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 gaattccaagccaaccggctacatattaagattctgcctcaataaaaatgataaatggca 922
Query: 65 atcactaacacacacacacacacacacacacacacacacacacacacacacacacacaca 124
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 atcacta--------acacacacacacacacacacacacacacacacacacacacacaca 870
Query: 125 ccaaaacaaacagaagatgaactattctgtggaaggaagaggacagtgagaggggaagat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 ccaaaacaaacagaagatgaactattctgtggaaggaagaggacagtgagaggggaagat 810
Query: 185 ggtcaagacaggataatggggacacatgagggcagagctcaaggattcatggttttgaga 244
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 809 ggtcaagacaggataatggggacacatgtgagcagagctcaaggattcatggttttgaga 750
Query: 245 cgatcataatgacattcactattctgtaggataataaaagttgcaataaaaataataaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 cgatcataatgacattcactattctgtaggataataaaagttgcaataaaaataataaat 690
Query: 305 aatgaaatccagtctcagacatgtttatttactacagatgacaatgtt-aaaaaaaaaaa 363
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 689 aatgaaatccagtctcagacatgtttatttactacagatgacaatgttaaaaaaaaaaaa 630
Query: 364 aaggcagagcaagtgtcatgatcaattaatgtctaaatgagattagaggatctgagtttt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aaggcagagcaagtgtcatgatcaattaatgtctaaatgagattagaggatctgagtttt 570
Query: 424 aaaattagacttggcgataaaaagtacatttatcataaatatttaacctccctcagcatg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aaaattagacttggcgataaaaagtacatttatcataaatatttaacctccctcagcatg 510
Query: 484 gtggtgattagactactgaactagccacctgctggcctcccttctcctccttttgaggcc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtggtgattagactactgaactagccacctgctggcctcccttctcctccttttgaggcc 450
Query: 544 atatgagaaagggattagagtttaagaaaatgaaatactgtataaacgaccaacatttta 603
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 449 atatgagaaagggattagagtttaagaaaatgaaatactgtataaatgaccaacatttta 390
Query: 604 tttgaaatgactataaaatgataccttttaaattgttgaactcatcataactctgccatc 663
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 389 tttgaaatgactataaaatgataccttttaaattgttgaac---tcataactctgccatc 333
Query: 664 tatttaa 670
|||||||
Sbjct: 332 tatttaa 326
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1068
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1058
Effective search space: 698280
Effective search space used: 698280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_l16.g1 MSMg01no541_l16.g1 CHROMAT_FILE:
MSMg01no541_l16.g1 PHD_FILE: MSMg01no541_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:30 2005
(290 letters)
>mm_chr5_39908680_39909369
Length = 690
Score = 511 bits (264), Expect = e-149
Identities = 276/280 (98%)
Strand = Plus / Plus
Query: 1 actgcagggtaacggttgaggatgattggttgaagattctgcaatcaaagtagtgaagat 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgcagggtaatggttgaggatgattggttgaagattctgcaatcaaagtagtgaagat 260
Query: 61 cagggataagaagccaagtctgtgtatacccagagctgttgacttccatagagaagacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagggataagaagccaagtctgtgtatacccagagctgttgacttccatagagaagacac 320
Query: 121 agtgaagataactcacctgtagtccagagttatagttttaggagatatatttccataagt 180
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgaagataattcaactgtagtccagagttatagttttaggagatatatttccataagt 380
Query: 181 gcaatgctttatttattttagtgtactgtaaatttgtgattgacatacctagcagtttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gcaatgctttatttattttagtgtactgtaaatttgtgattgacatacctatcagtttta 440
Query: 241 catatttatgggctatagtgatatatatatatatatatat 280
||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catatttatgggctatagtgatatatatatatatatatat 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
