NNNCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATAAAGCATGACTTCAGGGTTTTTTTTTTTTCTTGCTCAAGC
CATTCCTCACCAGAAAATCATGATTATTATTTTTTATTTATTTATGATAT
TTAAATTTTACACCAAGCAGCATATGAACTATTTTTCTTAATCCTTTATG
TGTGCCTCACCAACACTTCAGAAGAGAATTCACACTTATCAATAATGTTG
TACCATTTGCCAGAAAATTCCCTTGAAATTCCTAATCTAATCTTGTTATC
CCCTGCAGAAAATAGCTTCTTGCAAAGCTTCAGAGTTCACTTGCTTTTGG
CTTTATGAAATTCTCATATCCCTTAGGGGGATACTGGGAGTCCTTTTTTT
TCTCATTTCAACTTTCAGAGAGTCTCTTTTCACTATGCAAAATCATCCAG
ACATGATCTAAAGGCTTGAGGAATGCATTATATACACAGAATTCAGGATT
CTGAATCATAACTCTAATTTACCAACTTGGGACTTCAGAAATCTAGAAAG
ACTTGCCTCACCATTGAAAAATATTCAACCCAGCTTTGTACTTATGTCAT
TGTTTTTCTTGTCATTGATGGTCAAGTGCAGGGTAGTGTTCAGTGGGAGT
CTTCAGTGAGAAGTGGCTAAACCCAAATTACTCATATATTTCCAACCTGG
ATAATATTCTGGCTGGCATACAGGCTTTGTCTCTCATTTACTGATTTCAT
CTTCTCCATATGCCAGA

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTAATAAGTTTATCTATTCAGTAACAT
TTAAATTTACTTCTAGTAGAGATCGTGAAACTAATTAGGAGTTACAAGGA
ACAGAGCTGGAATAGCTTGGGGCTGGTCTGCAAAGTGTTTACTTGGGACA
ATAGCCAGTCTTACCCAGACAAAGGAATTAATAATGGCCTAGAAAATAGG
TGGATTTACCATGAAAGAGTTAGGGAATCCCCCTGAGACAGGTTGCTTCA
CTAGACCCAAAGAAACAGCATAATCAGGCATTTACTAAGAACACCTGGTG
GTGGACTTAACAATAGATTAGCATTACACCTGGCTCCCTTCTTAGTGGTA
AACATGGCCTGGTCCTGCCATCTTTTAATGTATACATTCCTTTTGTGTTG
TGTCACTGTAACTTAGAGGATGTATTTGCCTGGTTTCTTTTTACTCTTCT
GTATAAAAAGTTTGATGCTCAACTTGAAAACTTAGATTCAGATTCTACAC
AATCTCTCATGTTAATTCTGTTTGTCATTCATTCGACAACTCCTTGTCCA
CCTGCAACCAGAGACCAGTTCTATGCAGACAGGGATCCAAAAAGGGTCTG
TGGGCATCAGGGAAATGAAAATCAAAACAACTTTGAGATCCCACCTCCAC
CAGTCAGAATGGCTAAAATCAAAAATTCGGTGACAGCAGATGCTGGCAAG
GATGTGGAGAAAAA

Query= MSMg01no541_n24.b1 MSMg01no541_n24.b1 CHROMAT_FILE:
MSMg01no541_n24.b1 PHD_FILE: MSMg01no541_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:42 2005
         (589 letters)



>mm_chr5_60304759_60305746
          Length = 988

 Score = 1085 bits (561), Expect = 0.0
 Identities = 581/589 (98%), Gaps = 4/589 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcataaagcatgacttcagggtttttttttttt---cttgctcaagccattcctc 60
           ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 201 ggaattcataaagcatgacttcagggtttttttttttttttcttgctcaagccattcctc 260

                                                                       
Query: 61  accagaaaatcatgattattattttttatttatttatgatatttaaattttacaccaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagaaaatcatgattattattttttatttatttatgatatttaaattttacaccaagc 320

                                                                       
Query: 121 agcatatgaactatttttcttaatcctttatgtgtgcctcaccaacacttcagaagagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcatatgaactatttttcttaatcctttatgtgtgcctcaccaacacttcagaagagaa 380

                                                                       
Query: 181 ttcacacttatcaataatgttgtaccatttgccagaaaattcccttgaaattcctaatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcacacttatcaataatgttgtaccatttgccagaaaattcccttgaaattcctaatct 440

                                                                       
Query: 241 aatcttgttatcccctgcagaaaatagcttcttgcaaagcttcagagttcacttgctttt 300
           ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 aatcttgttatcccctgcataaaatagcttcttacaaagcttcagagttcacttgctttt 500

                                                                       
Query: 301 ggctttatgaaattctcatatcccttagggggatactgggagtccttttttttctcattt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 ggctttatgaaattctcatatcccttagggggatactgggagtccttttttt-ctcattt 559

                                                                       
Query: 361 caactttcagagagtctcttttcactatgcaaaatcatccagacatgatctaaaggcttg 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caactttcagagtgtctcttttcactatgcaaaatcatccagacatgatctaaaggcttg 619

                                                                       
Query: 421 aggaatgcattatatacacagaattcaggattctgaatcataactctaatttaccaactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aggaatgcattatatacacagaattcaggattctgaatcataactctaatttaccaactt 679

                                                                       
Query: 481 gggacttcagaaatctagaaagacttgcctcaccattgaaaaatattcaacccagctttg 540
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 680 gggacttcagaaatctagaaagacttgtctcaccattgaaaaatattcaacccagctttg 739

                                                            
Query: 541 tacttatgtcattgtttttcttgtcattgatggtcaagtgcagggtagt 589
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tacttatgtcattgtttttcttgtcattgatggtcaagtgcagggtagt 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 988
Length adjustment: 10
Effective length of query: 579
Effective length of database: 978
Effective search space:   566262
Effective search space used:   566262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)