NNAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTGTTTCCTGGCTGAATGAAGTTCTTGTCCTCCTCTGGGC
CCAGGTCTAGGCTTCATTGCTTCTGTTCTTGTACATGAGTGTCTACAGAA
TAAGCAAAATGCTGACAAAACGTTTATCTCCTTGAAACATCTGTGTCATT
AGGAAGCCGGGGTTTTCTTCTACAGGAGTAGCGATATTCGATCCATACTT
TTCCCCTTTGTAGAGGGCAGCATTATAGATTTAGAAATGAACAACATTGT
TGTGTCTACATAGTTGGATCACAGTGTTGATCTGAGAACTTGCCAAGCTT
ATTAAGACTATTTCCAGTATGCTTTTGAGTAGATGTTGCAGCTAACCTCA
TTTGTATTGTTTTTGAAATTAACTAAAGTACCAGATTCAATACAATTGAT
GGATTGGAATGATGTATAACAAAATTGTAATCATATCAGGACTACTGTCA
ATTAAATAACAGGAAATGTTTAATAATGTGTTTTAACTGTGTGTTTGTAA
ATGGAAGCAACAGTAAATATCCTGAATTAACTTTGACATTACCTTTGAGT
GTGTTGTCTTAGAGATGTGCTGGTGAAGAATTCTTGGAGACCCAGGGTTT
CCATCTCTCATCTTGGGGCTCCATGTCTCATCATGGGGTTTGTGAGAGAA
TCACCTGTCTTTAGCTTGTATAATGATTATCCTCTTAACAATTAATTATG
TACAATTGCT

TAATCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGGACAAAACTTTTGTCCAGA
ACACAACACAGAAGAAGTCAGTAGATGCCATAACTATGTTATGTAAGCTT
GAGTTCTGTGTCACAATGGGTCATAGAATGTTAGTAGACTGAGAGGGACC
TGACCATCCAGGGTTAACATTCTGTCTTTTGCCAGTTCCCTGAGTCACTC
CCTGTGCACCAGAGAACATGTATCTTGACCCTACTTCTTCATGGGGTAGA
GAATGTGTAGAAATGGGGTTCTTAAGGCATCTTAGAAAAGAGTTTTGGTG
ATTTGATAGTGGATTTGGGTTGCTTGTTTCAGAATATATGAGTTTGACAT
AAGCTGCTTTGGTAAGTTAGCAAAGCCGTATGGATTCTAAATTTATAGGG
TATGAAACCTATGAGCTGACCCTGATAATGTCAGGGCAGCAAGGGTGAGC
TTTGTCTGCCTGCATTCACGGTCCTCCCTCTGCCACACACTCTGGAAGAC
TTCAAGAAACAAAAGGCCAGTTTTTTTTTGTTTGTTTTGTTTTTTTGGTG
TGTGTGTGTGTAAAATGTCCTATCAAAGAATATCCACTTAAGTGAAAGAA
ACAAATATTTCAGCATACGAGAAAAATCTCTTTTTTGCTAATACTATTAA
AATACAAACATATTTTTAATAAAATTAAACTTTTGAAGTTAGATTACCTT
CATN

Query= MSMg01no542_a22.g1 MSMg01no542_a22.g1 CHROMAT_FILE:
MSMg01no542_a22.g1 PHD_FILE: MSMg01no542_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:57 2005
         (673 letters)



>mm_chr5_105366451_105367522
          Length = 1072

 Score = 1237 bits (640), Expect = 0.0
 Identities = 665/676 (98%), Gaps = 7/676 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggacaaaacttttgtccagaacacaacacagaagaagtcagtagatgccataactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 ctgggacaaaacttttgtccagaacacaacacagaagaagtcagtagatgccataactat 757

                                                                       
Query: 61  gttatgtaagcttgagttctgtgtcacaatgggtcatagaatgttagtagactgagaggg 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 756 gttatgtaagcttgagttctgtgtcacaatggggcatagaatgttagtagactgagaggg 697

                                                                       
Query: 121 acctgaccatccagggttaacattctgtcttttgccagttccctgagtcactccctgtgc 180
           |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 696 acctgaccgtccagggttaacattctgtcttttgccagttccctgagtctctccctgtgc 637

                                                                       
Query: 181 accagagaacatgtatcttgaccctacttcttcatggggtagagaatgtgtagaaatggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 accagagaacatgtatcttgaccctacttcttcatggggtagagaatgtgtagaaatggg 577

                                                                       
Query: 241 gttcttaaggcatcttagaaaagagttttggtgatttgatagtggatttgggttgcttgt 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gttcttagggcatcttagaaaagagttttggtgatttgatagtggatttgggttgcttgt 517

                                                                       
Query: 301 ttcagaatatatgagtttgacataagctgctttggtaagttagcaaagccgtatggattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ttcagaatatatgagtttgacataagctgctttggtaagttagcaaagccgtatggattc 457

                                                                       
Query: 361 taaatttatagggtatgaaacctatgagctgaccctgataatgtcagggcagcaagggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 taaatttatagggtatgaaacctatgagctgaccctgataatgtcagggcagcaagggtg 397

                                                                       
Query: 421 agctttgtctgcctgcattcacggtcctccctctgccacacactctggaagacttcaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agctttgtctgcctgcattcacggtcctccctctgccacacactctggaagacttcaaga 337

                                                                       
Query: 481 aacaaaaggccagtttttt--tttgtttgttttgtttttttggtgtgtgtgtgtgtaaaa 538
           |||||||||||||||||||  |||||||||||||||||||||    ||||||||||||||
Sbjct: 336 aacaaaaggccagtttttttgtttgtttgttttgtttttttg----gtgtgtgtgtaaaa 281

                                                                       
Query: 539 tgtcctatcaaagaatatccacttaagtgaaagaaacaaatatttcagcatac-gagaaa 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 280 tgtcctatcaaagaatatccacttaagtgaaagaaacaaatatttcagcatactgagaaa 221

                                                                       
Query: 598 aatctcttttttgctaatactattaaaatacaaacatatttttaataaaattaaactttt 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 aatctcttttttgctaatactattaaaatacaaacatatttttaataaaattaaactttt 161

                           
Query: 658 gaagttagattacctt 673
           ||||||||||||||||
Sbjct: 160 gaagttagattacctt 145


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1072
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1062
Effective search space:   704106
Effective search space used:   704106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)