BAC Information

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BAC

Clone NameMSMg01-542E14
Chromosome5 (Build37)
Map Location 6,454,520 - 6,455,240
singlet/doubletsinglet
Overlap genenone
Upstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854, LOC100041208
Downstream geneEG435830, LOC100042651, 4921511H03Rik, LOC242823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542E14.T7 (MSMg01no542_e14.b1)MSMg01-542E14.TJ (MSMg01no542_e14.g1)
ACCAG608098AG608099
length765755
length of high quality
(start - end)		717 (47 - 763)681 (75 - 755)
definitionCHROMAT_FILE: MSMg01no542_e14.b1 PHD_FILE: MSMg01no542_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:16 2005CHROMAT_FILE: MSMg01no542_e14.g1 PHD_FILE: MSMg01no542_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCG
CGGAATTCAAGAGCACAGATAAATGAATAATATGCAAAAACTTTAGGCTA
ATGGGTGTTTTAAATGTATCATTCCCCATAAATTATGAATGTAATAGGTG
TAAACCCACATCACAGTCTGAGAGTATTATGTTTAATATGTTTTCTCAAT
ATTGTCTGATCATGTTTTTCATCTTGTTCTATCTTCCATTTGCCTGATTT
GAATCCAGGTCTAAATATGGCTTCTTCAAGAAGCAGAAACCCTGAAAGTC
TTATAAATGTTGTGTTGAAGTTACAGCCAAATTGTACTACTCTTCAAAAT
TAGTCTGAAATGCTGATTTTTTTTAAAAGATGAATTAGATATCTTTATCT
TTTGGCATACCTGCTTCAGCTCTAATTGCATTTGTATGTGTGGACACTGA
CTGAGACATAGTCCTCTGAGCACCTCCATTTAGAGAGGCTTTGTTCTGTT
CTCTCTTAAGTCTATGAAGTGTCTGCCATGTACCTGTGCAGCAGAATTAC
TCCCCCATTGAATCGTTGTCACGAGTCAAAGCATGTCACTCTGCACATCT
ATGCAGTGTGTCCTCACAAATGGTCTTATTACAGTTGATCATCGTTTTCT
ACCAGAAATAAATGGATAGAATGACATCATGGCTATTTAAAACTGTTATA
ATCATCGAATGTAGCATTGTCCAGTTTTGAAAGAAAAGGACACACCATAC
GTTTTGTATTTATTN

ACCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAATGTTACCTATCCGGTAAC
ATTCAAATTTACTTCTAGTAGAGACAAGACAGTGAAACTAATTAGGCATT
ACAAAGAACAAAGCTGGAATAGCTCAGGGCTGGTCTGCAGAGTGATTACT
TAGGACAGTAGCCAGTCTCACCCAAAAAAGGGAGTATACAATGGCCTAGC
TATTAGGTGGGTTTACCATGTAAGAGATAGGGAATCCCACTGAGACAGGA
ATCTTCACTACAGTAAGGGATAGCAGGCTACATTGCATATTCGAAGCAAG
TTGGTGAATTCTTCTAACAAATGGAGATTCTCCACAGATAGTTAAAAGAA
CAGCCAAGCTACACTCATACAAGAATTTATCAACATCTAGGAAATAGGGG
GTTTGTGGTGTTACATTATTCATGAGAAGGTCTGCTAGAGCAGAAACCCC
TGATGCTAGCTTTCACAAGGCTCAAAGGAGTAGCATAAATTGACTAGGGT
GTGAAATCCTTACCTGTCATTAGCTGACCCTAAGCAGAGCTGTTTTATCT
TTACTGTAAATACTACCTGGTTCCTGTAAGTCCTTTTGAAGTCATTCCTT
TGTTTTGTGTCAGGTAACTTCAATGTACTTTGCCTGCCATGACATCCTAC
CCCTTTGTTTTCTGTATTATATAAGACTAGTTTTCAGTTTGGGACAATAT
ATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_e14.b1 MSMg01no542_e14.b1 CHROMAT_FILE:
MSMg01no542_e14.b1 PHD_FILE: MSMg01no542_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:16 2005
         (717 letters)



>mm_chr5_6454324_6455440
          Length = 1117

 Score = 1282 bits (663), Expect = 0.0
 Identities = 702/721 (97%), Gaps = 10/721 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcaagagcacagataaatgaataatatgcaaaaactttaggctaatgggtgtttta 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaattcaagagcacagataaatgaataatatgcaaaaactttaggctaatgggtgtttta 256

                                                                       
Query: 67  aatgtatcattccccataaattatgaatgtaataggtgtaaacccacatcacagtctgag 126
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aacgtatcattccccataaattatgaatgtaataggtgtaaacccacatcacagtctgag 316

                                                                       
Query: 127 agtattatgtttaatatgttttctcaatattgtctgatcatgtttttcatcttgttctat 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agtattatgtttaatatgttttctcaatattgtctgatcatgtttttcatcttgttctat 376

                                                                       
Query: 187 cttccatttgcctgatttgaatccaggtctaaatatggcttcttcaagaagcagaaaccc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cttccatttgcctgatttgaatccaggtctaaatatggcttcttcaagaagcagaaaccc 436

                                                                       
Query: 247 tgaaagtcttataaatgttgtgttgaagttacagccaaattgtactactcttcaaaatta 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgaaagtcttataaatgttgtgttgaagttacagccaaattgtactactcttcaaaatta 496

                                                                       
Query: 307 gtctgaaatgctgattttttttaaaagatgaattagatatctttatcttttggcatacct 366
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtctgaaatgctgattttttaaaaaagatgaattagatatctttatcttttggcatacct 556

                                                                       
Query: 367 gcttcagctctaattgcatttgtatgtgtggacactgactgagacat----------agt 416
           ||||||||||||||||||||||||||||||| |||||||||||||||          |||
Sbjct: 557 gcttcagctctaattgcatttgtatgtgtggtcactgactgagacatccagaaacatagt 616

                                                                       
Query: 417 cctctgagcacctccatttagagaggctttgttctgttctctcttaagtctatgaagtgt 476
           |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cctctgggcacctccattaagagaggctttgttctgttctctcttaagtctatgaagtgt 676

                                                                       
Query: 477 ctgccatgtacctgtgcagcagaattactcccccattgaatcgttgtcacgagtcaaagc 536
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 677 ctgccatgtacctgtgcagcagaattactcccccattgaattgttgtcacgagtcaaagc 736

                                                                       
Query: 537 atgtcactctgcacatctatgcagtgtgtcctcacaaatggtcttattacagttgatcat 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 atgtcactctgcacatctatgcagtgtgtcctcacaaatggtcttattacagttgatcat 796

                                                                       
Query: 597 cgttttctaccagaaataaatggatagaatgacatcatggctatttaaaactgttataat 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 cgttttctaccagaaataaatggatagaatgacatcatggctatttaaaactgttataat 856

                                                                       
Query: 657 catcgaatgtagcattgtccagttttgaaagaaaaggacacaccatacgttttgtattta 716
           ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 857 catcgaatgtagcattgtccagttttgaaagaaaaggacacacaatacattttgtattta 916

            
Query: 717 t 717
           |
Sbjct: 917 t 917


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1117
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1107
Effective search space:   782649
Effective search space used:   782649
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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