Query= MSMg01no542_k08.b1 MSMg01no542_k08.b1 CHROMAT_FILE:
MSMg01no542_k08.b1 PHD_FILE: MSMg01no542_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:45 2005
(686 letters)
>mm_chr5_81579935_81581015
Length = 1081
Score = 1259 bits (651), Expect = 0.0
Identities = 673/683 (98%), Gaps = 5/683 (0%)
Strand = Plus / Minus
Query: 4 ggaattctccttggatggtatttattcaaattcctggatagaaaactaagatacattata 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 ggaattctccttggatggtatttattcaaattcctggatagaaaactaagatacattata 822
Query: 64 aaaattgctttagaaaccaaacctaaattgctaatcaatccacatattgaaaaatatttg 123
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 aaaattgctttag-----aaacctaaattgctaatcaatccacatattgaaaaatatttg 767
Query: 124 aatgtaacaaagatcataaaattataggattaagaaagaccagaagaacatatccattaa 183
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 766 aatgtaacaaagatcataaaattataggattgagaaagaccagaagaacatatccattaa 707
Query: 184 agaagacaaaaggctataaatgactttcatcaacacagctaggataacttttattttggt 243
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 706 agaagacaaaaggctataaatggctttcatcaacacagctaggataacttttattttggt 647
Query: 244 atgattttatcttgtatttgtgcaagacttgtgcagtgccttgtgaagacttacatgtat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 atgattttatcttgtatttgtgcaagacttgtgcagtgccttgtgaagacttacatgtat 587
Query: 304 tttaaatagtagaacattaaataaagcaaaaatctcatttttttaattcaattcaaaata 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tttaaatagtagaacattaaataaagcaaaaatctcatttttttaattcaattcaaaata 527
Query: 364 tcagaaggcagatcttgtctcctcagctttatgttacagatgagtttgtattaaaaaata 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tcagaaggcagatcttgtctcctcagctttatgttacagatgagtttgtattaaaaaata 467
Query: 424 gggctaatagcaatagtagtattatacttgtctgagcaggaataccaccatacattcctt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gggctaatagcaatagtagtattatacttgtctgagcaggaataccaccatacattcctt 407
Query: 484 ttcattttcttaacaaaagtgatgacagaaaacatcgactaagtaaacattttcatgtgt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttcattttcttaacaaaagtgatgacagaaaacatcgactaagtaaacattttcatgtgt 347
Query: 544 ccttgcaacaaattgagactcacaaaagccagttttatgcatgtatgttagtgagatggt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ccttgcaacaaattgagactcacaaaagccagttttatgcatgtatgttagtgagatggt 287
Query: 604 agctttttaagtcaggatggcaatctgcaccttgcttcatttctccaaagagggaaaata 663
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 286 agctttttaagtcaggatggcaatctgcaccttgcttcatttctccgaagagggcaaata 227
Query: 664 aatctcatcgttttatccctctg 686
||||||| |||||||||||||||
Sbjct: 226 aatctcaccgttttatccctctg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1081
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1071
Effective search space: 723996
Effective search space used: 723996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_k08.g1 MSMg01no542_k08.g1 CHROMAT_FILE:
MSMg01no542_k08.g1 PHD_FILE: MSMg01no542_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:45 2005
(623 letters)
>mm_chr5_81558242_81559264
Length = 1023
Score = 1181 bits (611), Expect = 0.0
Identities = 620/623 (99%)
Strand = Plus / Plus
Query: 1 tcaaattatgtggatgattaaacaaaatatttctctcattgccactgtggaagattagtg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tcaaattatgtggatgattaaacaaaatatttgtctcattgccactgtggaagattagtg 260
Query: 61 actccatgaatacaaacaccaacaagtaatgactagctcagctgagtcctattgttatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actccatgaatacaaacaccaacaagtaatgactagctcagctgagtcctattgttatgg 320
Query: 121 gattagtacatcacctttgcttcctgctagggagaatagtttgacaccaaactcttctgc 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gattagtacatcacctttgcttcctgctatggagaatagtttgacaccaaactcttctgc 380
Query: 181 aggagttctgtcttcaaaggatggaatgcctacctagaaagcttggtgtcaccacttcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagttctgtcttcaaaggatggaatgcctacctagaaagcttggtgtcaccacttcct 440
Query: 241 agctctataaccatcctgtgcaatctctgtgtcctggtaacagtccccagatcctcacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctctataaccatcctgtgcaatctctgtgtcctggtaacagtccccagatcctcacat 500
Query: 301 gctgaaataaccttacggatggattgaatgcttcctgtttaacatgtatcactcaaccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgaaataaccttacggatggattgaatgcttcctgtttaacatgtatcactcaaccag 560
Query: 361 gataatcctatgtaagtgctgacagtttaggatgtcactgataagatttgatttatttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gataatcctatgtaagtgctgacagtttaggatgtcactgataagatttgatttatttaa 620
Query: 421 atttccccttctctagcaaatgtagtatttaggagtccacccccttaccctgggagcttt 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 atttccccttctctagcaaatgtagtatttaggagtccacccccttcccctgggagcttt 680
Query: 481 ttttaaaactcagtaaatgtgacataaacacataatcaatgtgtcatttgtttgattgtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttaaaactcagtaaatgtgacataaacacataatcaatgtgtcatttgtttgattgtt 740
Query: 541 tggtgtcacgtgactttattaaaaatactagtaatttatttatatatttaatagtccaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggtgtcacgtgactttattaaaaatactagtaatttatttatatatttaatagtccaag 800
Query: 601 tgacacttaaagtgtgtgaaagg 623
|||||||||||||||||||||||
Sbjct: 801 tgacacttaaagtgtgtgaaagg 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
