Query= MSMg01no542_l07.b1 MSMg01no542_l07.b1 CHROMAT_FILE:
MSMg01no542_l07.b1 PHD_FILE: MSMg01no542_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:50 2005
(684 letters)
>mm_chr5_24747515_24748598
Length = 1084
Score = 685 bits (354), Expect = 0.0
Identities = 368/376 (97%), Gaps = 7/376 (1%)
Strand = Plus / Plus
Query: 316 ctctctttcttctttctgtctct--ttttcttttttcctctgatatgcatgccatgccat 373
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 509 ctctctttcttctttctgtctctctttttcttttttcctctgatatgcatgccatgccat 568
Query: 374 g-----tcatgtcatgtcatgtcatgtgagagtacatacaccatacacattaatgttgta 428
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gccatgtcatgtcatgtcatgtcatgtgagagtacatacaccatacacattaatgttgta 628
Query: 429 ggattaacttatttttgctaaaaagaaagaacaaaagaaagctgaattattgatctctaa 488
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 629 ggattaacttatttttgctaaaaagaaagaacaaaaaaaagctgaattattgatctctaa 688
Query: 489 ataaactttcaacctgaaaaattatggagaaaaactgccctttaaagcaatgcagtggta 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ataaactttcaacctgaaaaattatggagaaaaactgccctttaaagcaatgcagtggta 748
Query: 549 tgtttttaaaattataaacagatgtgtataagtactgccctatagctgacacttgtgtcc 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tgtttttaaaattataaacagatgtgtataagtactgccctatagctgacacttgtgtcc 808
Query: 609 tatgcacaagggccatttggtgttatttttaattgttctccatcttaattttggagacat 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tatgcacaagggccatttggtgttatttttaattgttctccatcttaattttggagacat 868
Query: 669 agtcctcactgaacct 684
||||||||||||||||
Sbjct: 869 agtcctcactgaacct 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_l07.g1 MSMg01no542_l07.g1 CHROMAT_FILE:
MSMg01no542_l07.g1 PHD_FILE: MSMg01no542_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:50 2005
(610 letters)
>mm_chr5_24927637_24928646
Length = 1010
Score = 1139 bits (589), Expect = 0.0
Identities = 604/609 (99%), Gaps = 1/609 (0%)
Strand = Plus / Minus
Query: 1 actacatagaccatactggcctcaaactgatagagatccacctgcctctgcctctagagt 60
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 682 actacataggccatactggcctcaaactgatagagatccacctgcctctgcctctagaat 623
Query: 61 actgggattaaaggcatatgctattattgcccattatgattattttatttttaattatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 actgggattaaaggcatatgctattattgcccattatgattattttatttttaattatta 563
Query: 121 tatgtgtttgtgttatctgtgtttgagtatgtggacatgagtgtatttgccatcagatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tatgtgtttgtgttatctgtgtttgagtatgtggacatgagtgtatttgccatcagatga 503
Query: 181 cagaggcactggatcgcccagagttggagtgacaggtggttggaagcttttgctttaacc 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cagaggcactggatctcccagagttggagtgacaggtggttggaagcttttgctttaacc 443
Query: 241 tctgaccaatctctccagtctccatgcatgaccccctccccccagcacactccccccacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tctgaccaatctctccagtctccatgcatgaccccctccccccagcacactccccccacc 383
Query: 301 cccatggtttttcctttttttcttttaaaagatagggccgtaggctaggctcaaattcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cccatggtttttcctttttttcttttaaaagatagggccgtaggctaggctcaaattcac 323
Query: 361 tctccctcctgagtgctggggcaataagcatggctggtttagtatggtgctaaggattaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tctccctcctgagtgctggggcaataagcatggctggtttagtatggtgctaaggattaa 263
Query: 421 atacaatgctttctgtatgctaggcaaatactatattaaccaagctacattcccagctta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atacaatgctttctgtatgctaggcaaatactatattaaccaagctacattcccagctta 203
Query: 481 aataagcatacttctgtcatgtcagttactgttcctgctaccattttctctttctgagag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 202 aataagcatacttctgtcatgtcagttactgttcctgctaccattttctctttctgaaag 143
Query: 541 agattgattgattgattgattgattttaaagatttatttattaattatatgtaagtaaca 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 142 agattgattgattgattgattgattttaaagatttatttattaattatatgtaagt-aca 84
Query: 601 ctgtagctg 609
|||||||||
Sbjct: 83 ctgtagctg 75
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
