NAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTTATAAGTGAAGACTAGACAACATGCTTTACCATGAGAT
ATGGCAAAAGACATCAAAATTCTTCCCAGTTCATAAAAATAAATTTCAAA
GTTATTTTGTTCCATAAACACCTATGCATGATTAGTCAATATTTGATTTT
TGAACCTGTTTTTAATAGTAATAATATCTCTTAAAATGGCGAGAAACATG
TAAGTATATTTTTAATGTGAAAATATGCCAATCATTTTATCTCTTCTGTA
ACTTTAGGTTTAGGAGATTAATTATTAAAAATTTGCTAATAGGTTACAAT
GATAAATCAGACTGATAAACAATTCAAGATAGGGAAGGCTTTTATAAGAG
TAAAAATGAGTGTATCTTCTGTCTGTTTTGCCCAATTCCAGTGTATTAGT
TTTGGCATATTATGTTATATTATATGATTTGTTCTGTTCATTGTCATTCC
TTAGAAGCCTGTTTTTTTCTAATGAGAGACAGAAATGGAGTGCTGTGGGG
GTAGAGGGAGGGGGAAATTGTAATCAAGATATTTTATTGGGAAAAAACTC
ATTTTTCAATTTAAAGCGAACATAAAAATCCTGCAGGCATCTTCATTGAA
AATGCCAAAATATGGGTTTAAACCAAAACCCTTGGGGGAAATGGTTGACC
CCATCCCCTGGAAGAGAACACATTCTGT

NCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATACATGAATATTGTATTTATA
ACATTTTTACCTCCCCACTGAACTCTTCCTACCTTACTATTATCTTTCAA
CTTCATGGCCTCTTATTTAATTATTATTTTGATATATATATATGTGTATG
TGTGAGCNNANNCTGNGTGAAGACCTCTCCATACGCGCGAGCAGGCACTG
ACGCGTCCTAATACAGGAAGACTCGGTATTGTGAAGTAGACAGCAGATGT
TGCTGAGTCCATCGGGAGATGTATTACATACCAAATGTGGCTAATACTGA
AGGTGGGAGTAGGGTCTGCAGTAGTGGTGATGAGAAGCTGAAGCACTTCA
CACTATCATAATGTTCAGCGTGTAAAGCCCATTGAGGATACATCCAGTAG
GTGTTTAGGAATTTGACGTTATATAAGCATTTCTGCATGCCGAACATGCC
CCTCCCCCCTACCATATTCAATGTTAGTTCCTTTGACATCCTGCATGACC
CAGATAACCGTCGTAAACGCGGGATTTTTTTCCGTATACTTAAGCCCCGT
TACCCCCATTTCATTAAGGATGGGCCCCCCCCCACTACCCAAAGGAAGGG
GTGTGGTGGTTACTCTTCCTAAAACACAAAACCTCAAGTTTTACTTGTAA
ACATTTGGGTAGGATTTGTAATAACACTGCGTCGTTGAACCTCGAGGAAT
ATTATATAGGGGCCTGGGTCATATTGGAGGTTTAG

Query= MSMg01no542_l16.b1 MSMg01no542_l16.b1 CHROMAT_FILE:
MSMg01no542_l16.b1 PHD_FILE: MSMg01no542_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:51 2005
         (456 letters)



>mm_chr5_49866288_49867143
          Length = 856

 Score =  866 bits (448), Expect = 0.0
 Identities = 451/452 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttataagtgaagactagacaacatgctttaccatgagatatggcaaaagaca 64
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattataagtgaagactagacaacatgctttaccatgagatatggcaaaagaca 264

                                                                       
Query: 65  tcaaaattcttcccagttcataaaaataaatttcaaagttattttgttccataaacacct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaaaattcttcccagttcataaaaataaatttcaaagttattttgttccataaacacct 324

                                                                       
Query: 125 atgcatgattagtcaatatttgatttttgaacctgtttttaatagtaataatatctctta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgcatgattagtcaatatttgatttttgaacctgtttttaatagtaataatatctctta 384

                                                                       
Query: 185 aaatggcgagaaacatgtaagtatatttttaatgtgaaaatatgccaatcattttatctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatggcgagaaacatgtaagtatatttttaatgtgaaaatatgccaatcattttatctc 444

                                                                       
Query: 245 ttctgtaactttaggtttaggagattaattattaaaaatttgctaataggttacaatgat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctgtaactttaggtttaggagattaattattaaaaatttgctaataggttacaatgat 504

                                                                       
Query: 305 aaatcagactgataaacaattcaagatagggaaggcttttataagagtaaaaatgagtgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatcagactgataaacaattcaagatagggaaggcttttataagagtaaaaatgagtgt 564

                                                                       
Query: 365 atcttctgtctgttttgcccaattccagtgtattagttttggcatattatgttatattat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atcttctgtctgttttgcccaattccagtgtattagttttggcatattatgttatattat 624

                                           
Query: 425 atgatttgttctgttcattgtcattccttaga 456
           ||||||||||||||||||||||||||||||||
Sbjct: 625 atgatttgttctgttcattgtcattccttaga 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)