ACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGTATGCGAGCCCTGTATTTTCATCATCTCTATCTCCTCTTTAA
TTCTCCAGTTTCTCCCATGCCCTCCCCCCACTTTATATAGAAACCTCCCG
AGTCCATTTGGTGTTGCTCATACGTACATGTTTGACACTGACCCCTTGGG
ATTGGATAAGCTGTCAGAGGTCTCATTCCAGAGAAGTCTGTTTTTCTCTC
AGCGGCCACTGATTACTTGTGGTTCTTCACAAAGGGGTGGGGCCTTGTGA
AATTCTTTCCCTCCTCATTGGCACGCTGACTGCTGCTGCTGTCTTTATGC
GGGTTTTGCTTAGGCAACTGCATTGTTGAGATACCACGGAAGCAGCTTCC
TTGTCGCGTGGAGAAGAAACAGCTTACATCATACTTCCTTGTCCTCTGGC
TCTTAAGATATTTTTTTTTTTGCCACCTTTTGGGTGGCAGTTCCTGAACC
TTAGGTATAAGGGTTGCATTATAAATTGGGTACCAATTGTGTCTGGGCAT
TCCATAGTTACTCTCTGGTAACATTTGACCAGTTGTGTATCTCTGTAACG
GTCTCCATTTGCTGGGAAAGGCAGTGTCTTTGATGAGGGCTGAGAGATTC
ACCTATCAGGCTGATCCCTTCATCATGGCTTTATTCACAGCAGATACTTC
CTACAGAGATAGGCTCACATGCAGAGAGTTGGTAAAGGAAGATGGGAGAG
AAGATATGA

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGCTCCCTCTCATCCCATCCTCCCCA
GCCCCATCTCATAGAAACACAAAGGTAACAAATGCATCAAGATCTACTAC
CTAAAGTTGTTGAGATAAAGAAGCAGGAAGTCACCTTCCAAAATTCAGAA
ACCCAGCCCAGTATGCTGGTCCACCCCTAGTTTTAGTACAGCTACATAAA
ATCATGGGTGTATGTCTATACCGCATGAGAGTAGAAGCAAAACAATCCAG
GGGAACAGGGGGAAAGTAAGAAGAGTGGAGAGGAGTGTAGAAGGGAAGGG
TAGCAGGCATGGGGACAGAAACATGTTCAATATACGATGTATATTTGTGT
GAAAGTGAACTTAGAATACAATACTGTGCACAGCATGCATATATATATAT
ATATATATGTATATATATATATATGCAATGAAAAAACACACTAAGATCAT
AGCACAGTGAATGTAGGAATATAGGTTCACATTTAAGAGCCTAGAGAATA
GAAATGGCTTCCGGCCATGTGCAGCTTCACGCTTCATCCTAAGTTCAGGG
TAACTAAGCCACAAACAAGAGGTCAAGCAGGAGATCATTGCCTAAAAGCC
AAAGACTTTTACAAAATCCTTTCCCTGGAGGGTTATCCAAACAAGCACGT
ACTATCTACTCCCATTTTCTCAAGCTCATGCATAAGTAAAACAGTCAAAT
AACTC

Query= MSMg01no542_m02.g1 MSMg01no542_m02.g1 CHROMAT_FILE:
MSMg01no542_m02.g1 PHD_FILE: MSMg01no542_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:54 2005
         (660 letters)



>mm_chr5_52189681_52190740
          Length = 1060

 Score = 1168 bits (604), Expect = 0.0
 Identities = 651/676 (96%), Gaps = 16/676 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggctccctctcatcccatcctccccagccccatctcatagaaacacaaaggtaacaaat 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 185 tggctccctctcatcccatcctccccaggcccatctcatagaaacacaaaggtaacaaat 244

                                                                       
Query: 61  gcatcaagatctactacctaaagttgttgagataaagaagcaggaagtcaccttccaaaa 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 245 gcatcaagatctactacctaaagttgctgagataaagaagcaggaagtcaccttccaaaa 304

                                                                       
Query: 121 ttcagaaacccagcccagtatgctggtccacccctagttttagtacagctacataaaatc 180
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 305 ttcagaaacccagcccagtctgctggtccacccctagttttagtacagctacataaaacc 364

                                                                       
Query: 181 atgggtgtatgtctataccgcatgagagtagaagcaaaacaatccaggggaacaggggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atgggtgtatgtctataccgcatgagagtagaagcaaaacaatccaggggaacaggggga 424

                                                                       
Query: 241 aagtaagaagagtggagaggagtgtagaagggaagggtagcaggcatggggacagaaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aagtaagaagagtggagaggagtgtagaagggaagggtagcaggcatggggacagaaaca 484

                                                                       
Query: 301 tgttcaatatacgatgtatatttgtgtgaaagtgaacttagaatacaatactgtgcacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgttcaatatacgatgtatatttgtgtgaaagtgaacttagaatacaatactgtgcacag 544

                                                                       
Query: 361 catgcatatatatat--------------atatatat--atgtatatatatatatatgca 404
           |||||||||||||||              || |||||  |||||||| ||||||||||||
Sbjct: 545 catgcatatatatatgtgtgtgtgtgtgtatgtatatgtatgtatatgtatatatatgca 604

                                                                       
Query: 405 atgaaaaaacacactaagatcatagcacagtgaatgtaggaatataggttcacatttaag 464
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 605 atgaaaaaacacattaagatcatagcacagcgaatgtaggaatataggttcacatttaag 664

                                                                       
Query: 465 agcctagagaatagaaatggcttccggccatgtgcagcttcacgcttcatcctaagttca 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 agcctagagaatagaaatggcttccggccatgtgcagcttcacgcttcatcctaagttca 724

                                                                       
Query: 525 gggtaactaagccacaaacaagaggtcaagcaggagatcattgcctaaaagccaaagact 584
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 725 gggtaactaagccacaaacaagaggtcaagcaggagatcattgcctaaaagccaaagatt 784

                                                                       
Query: 585 tttacaaaatcctttccctggagggttatccaaacaagcacgtactatctactcccattt 644
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tttacaaaatcctttccctggagggttatccaaacaagcacgtactatctactcccattt 844

                           
Query: 645 tctcaagctcatgcat 660
           ||||||||||||||||
Sbjct: 845 tctcaagctcatgcat 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)