CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGATCACAAGGAAGTGAAACTGAAAGGATTAGGAGGTGTGGCCT
TGTTGGAGGAAGTGTGTCATTGGGGCTGGGTTTTAAAATCTATGCCAGGC
CTCCACCCTCCCCACCCCCATCCCCTACACACTTTCTCAGTTGCTGCTCC
TGTACCTGCCGGTGCACTATGGTGCTCCCCACTATGATGATGATAATAAT
GGACTAAATCTCTGAAACTGTAATCCAAGGCCAATTAAATGTTATCCTTT
GTAAGTGTTGCTGTGGTCATGGCATCTCTTCACAGCAACAGTGACTAAGA
CACCATGCTTCCAGCCTCCCAAGGATCCACTTAACATGGGGGTCTGTGAC
TGCTCTGGGTGTTCCTCTGTCATTGGTTCAAGTCTATATGATTCGTCACA
ATACTAAGTTTCTCCTTCAACATCCCTCTCACAGTACGTTCCAGCAAGAC
CATGCTGCATGGAGTCCCTTGAACAAGCACGCACTTCTTTGGATGTGCAA
ATTAGGAAGCAAATTAGGAAGCCATTGTAGCCATCTGCCACACCACGTGA
AAATAAGCCATACCTTTCTTTCAACCAAAGCTGCAGAGAACAGGTCTCAC
TCTTGTTAGAAACCACACTGCCAAATACTCATTCCTTCAGTGTGTATGTA
CATGTGCCTACTGTTCCCTAGGGGTCCAGGGAACAGCAACAGATGGAGCC
AATTCCCAGTCCT

CCATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTACCCCATTTTTA
ATAGGGTTTTATTTGGTTCTCTGGAGTCCAGCTTCTTGAGTTCTTCGTAT
ATTTTGGATATTAGCTCTGTATTAGATGTAGGGTTGGTAAAGATCTTTTC
CCAATCAGTGTGTTGCTGTTTTGTCCTATTGACAGTGTCCTTTGCTTTAC
AGAAGCTTTGCAATTTTATAAAGTCATATTTGTCGATTGTTGATCTTAGA
GCCTAAGCCACTGATTTTCTGTTCAGGAAAATTTCCCCTGTGCCCATGTG
TTCGAGACTCTTCCCCACTTTCTTTCTATTAGTTTCAGTTTGTCTCATTT
TATGTGGAGGTCCTTGATCCACTTGGATTTGAGCTTTTGACAAGGAGATA
AGAATGGATTGATTTGTATTCTTTTGCATGCTGACCAACAGTTGAACCAG
CACCATTTGTTGAAAATGCCATCTTTTTTCCACTGGATGGTTTTAGCTTT
TTTGTCAAAGATCAAGTGACTATAGGTGTGTGGGTTCATTTGTGGGTCTT
CAATTCTATTCCATTGGTCAACCTGCCTGTCTCTGTACCAATAACACAAG
GGTTTTTTGGTTTTTTTTTCTTGGTTTTTTCATTATTGCTCTGTAGTATA
TCTTGAGGTCAGGAATGGTGATTCTCCCAGAAGTTCTTTTATTGTTGAGA
ATA

Query= MSMg01no542_o06.b1 MSMg01no542_o06.b1 CHROMAT_FILE:
MSMg01no542_o06.b1 PHD_FILE: MSMg01no542_o06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:04 2005
         (718 letters)



>mm_chr5_21023327_21024444
          Length = 1118

 Score = 1234 bits (638), Expect = 0.0
 Identities = 696/718 (96%), Gaps = 8/718 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgatcacaaggaagtgaaactgaaaggattaggaggtgtggccttgttggagg 64
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttggtcacaaggaagtgaaactgaaaggattaggaggtgtggccttgttggagg 264

                                                                       
Query: 65  aagtgtgtcattggggctgggttttaaaatctatgccaggcctccaccctccccaccccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtgtgtcattggggctgggttttaaaatctatgccaggcctccaccctccccaccccc 324

                                                                       
Query: 125 atcccctacacactttctcagttgctgctcctgtacctgccggtgcactatggtgctccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcccctacacactttctcagttgctgctcctgtacctgccggtgcactatggtgctccc 384

                                                                       
Query: 185 cactatgatgatgataataatggactaaatctctgaaactgtaatccaaggccaattaaa 244
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caccacgatgatgataataatggactaaatctctgaaactgtaatccaaggccaattaaa 444

                                                                       
Query: 245 tgttatcctttgtaagtgttgctgtggtcatggcatctcttcacagcaacagtgactaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgttatcctttgtaagtgttgctgtggtcatggcatctcttcacagcaacagtgactaag 504

                                                                       
Query: 305 acaccatgcttccagcctcccaaggatccacttaacatgggggtctgtgactgctctggg 364
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 505 acaccatgcttccagcctcccaaggacccacttaacatgggggtctgtgactgctctggc 564

                                                                       
Query: 365 tgttcctctgtcattggttcaagtctatatgattcgtcacaatactaagtttctccttca 424
           |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||
Sbjct: 565 tgttcctctgtcattggttcaagtctatacaattcgtcacaatactacgtttctccttca 624

                                                                       
Query: 425 acatccctctcacagtacgttccagcaagaccatgctgcatggagtcccttgaacaagca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acatccctctcacagtacgttccagcaagaccatgctgcatggagtcccttgaacaagca 684

                                                                       
Query: 485 cgcacttctttggatgtg--c--aaattaggaagcaaattaggaagccattgtagccatc 540
           |||||||||||| |||||  |  ||  ||||  |||||||||||||||||||||||||||
Sbjct: 685 cgcacttctttgtatgtgtgctgaa--tagg--gcaaattaggaagccattgtagccatc 740

                                                                       
Query: 541 tgccacaccacgtgaaaataagccatacctttctttcaaccaaagctgcagagaacaggt 600
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgccacaccacgtgaaaataacccatacctttctttcaaccaaagctgcagagaacaggt 800

                                                                       
Query: 601 ctcactcttgttagaaaccacactgccaaatactcattccttcagtgtgtatgtacatgt 660
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 801 ctcactcttgttagaaaccacactgccaaatactcattccttcaatgtgtatgtatatgt 860

                                                                     
Query: 661 gcctactgttccctaggggtccagggaacagcaacagatggagccaattcccagtcct 718
           |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 861 gcctactgtttcctaggggtccagggaacagcaacagatggagccaattcccaatcct 918


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 718
Length of database: 1118
Length adjustment: 10
Effective length of query: 708
Effective length of database: 1108
Effective search space:   784464
Effective search space used:   784464
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)