Query= MSMg01no542_p18.b1 MSMg01no542_p18.b1 CHROMAT_FILE:
MSMg01no542_p18.b1 PHD_FILE: MSMg01no542_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:12 2005
(619 letters)
>mm_chr5_25131073_25132091
Length = 1019
Score = 1019 bits (527), Expect = 0.0
Identities = 584/623 (93%), Gaps = 32/623 (5%)
Strand = Plus / Plus
Query: 5 gaattcccaacacactgcaatggtttttctgtgaggaaggctgttggtgagggaattgta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccaacacactgcaatggtttttctgtgaggaaggctgttggtgagggaattgta 264
Query: 65 aggagaaatagctttttgttttttcttaaatttgtgcataaaagtctgagacctgagtgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggagaaatagctttttgttttttcttaaatttgtgcataaaagtctgagacctgagtgt 324
Query: 125 ggactctctggagagaaattggggtacactgtgtttctgcttgtgaccagtctatcgaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggactctctggagagaaattggggtacactgtgtttctgcttgtgaccagtctatcgaaa 384
Query: 185 gggttaagacccttattttgaagtttgtggctcaactacctccaggtctactccctctgt 244
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 385 gggttaagacccttattttgaagtttgtggctcaactacttccacgtctactccctctgt 444
Query: 245 gggaacagaggggtcctcaggcaaactgtactttgtaaggagatgtggttaacctgggct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggaacagaggggtcctcaggcaaactgtactttgtaaggagatgtggttaacctgggct 504
Query: 305 gcaagacaaagggatctggtgcgttggtacctcagcatagatacccagaaagggctggca 364
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 505 gcaagacaaagggatctggtgcgttggtacctcagcatagacacccagaaaggactggca 564
Query: 365 gttctctggaagagcctgaggcagcaaacacacacacacacacacacacacacacacaca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gttctctggaagagcctgaggcagcaaacacacacacacacacacacacacacacacaca 624
Query: 425 cacacacacacacacacacacacacacacacacacacacacacacacacactgtgttccc 484
||||||||||||||| ||||||||||| |||||||||
Sbjct: 625 cacacacacacacactcacacacacac------------------------tgtgttccc 660
Query: 485 aaagatctcccaggacccatttgcactgccttggttggcctgagtgggagag-------- 536
||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 661 aaagatctcccaggacccatttgcactgccttgcttgacctgagtgggagagtgagagag 720
Query: 537 agttgcttaacctttctctttgcccaaggctcctcttctcccatggcattaagagtgcac 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 agttgcttaacctttctctttgcccaaggctcctcttctcccatggcattaagagtgcac 780
Query: 597 ctgcattgctgggcatgctttta 619
|||||||||||||||||||||||
Sbjct: 781 ctgcattgctgggcatgctttta 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 104
Number of extensions: 40
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_p18.g1 MSMg01no542_p18.g1 CHROMAT_FILE:
MSMg01no542_p18.g1 PHD_FILE: MSMg01no542_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:12 2005
(659 letters)
>mm_chr5_25298763_25299826
Length = 1064
Score = 1009 bits (522), Expect = 0.0
Identities = 650/754 (86%), Gaps = 95/754 (12%)
Strand = Plus / Minus
Query: 1 aataagaggacagctattaaatagacaaaaagtaccaagaacagctgctgaatgaaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 aataagaggacagctattaaatagacaaaaagtaccaagaacagctgctgaatgaaaaat 988
Query: 61 ctcactgggaatgccacaaccccagagcaccag--------------------------- 93
|||||||||||||||||||||||||||||||||
Sbjct: 987 ctcactgggaatgccacaaccccagagcaccagccttaacatgtgtgaagaccttaacat 928
Query: 93 ------------------------------------------------------------ 93
Sbjct: 927 gtgtgaagaccttaacatgtgtgaagaccttaacatgtgtgaagaccttaacatgtgtga 868
Query: 94 ---ccttaacatgtgtgaagaccttaacatgtgtgaagaccttaacatgtgtgaagacct 150
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 agaccttaacatgtgtgaagaccttaacatgtgtgaagaccttaacatgtgtgaagacct 808
Query: 151 ctccatacacacaagcaggcactgacgcatcctaatacaggaagactcggtatttttaaa 210
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 807 ctccatacacacaagcaggcactgacgcaccctaatacaggaagactcggtatttttaaa 748
Query: 211 taaacatcaaatgttgctgagtccatctggaaatgtattacaaaccaaatgtggctaata 270
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 747 taaacatcaaatgttgctaagtccatctgggaatgtattacaaaccaaatgtggctaata 688
Query: 271 ctgaaggtgggagtagggtctgcagtagtggtgatgagaagctgaagcacttcacactat 330
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttgaaggtgggagtagggtctgcagtagtggtgatgagaagctgaagcacttcacactat 628
Query: 331 caaaatgttcagcgtgtagagcccatttattatacatccagtaagtgtttaggaatttga 390
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 627 caaaatgttcagcgtgtaaagcccatttattgtacatccagtaagtgtttaggaatttga 568
Query: 391 cattataaaagcattctgcatgcagacatgcacacacacatacaaaattcaatgtagtac 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cattataaaagcattctgcatgcagacatgcacacacacatacaaaattcaatgtagtac 508
Query: 451 tataacaacagcaagac----aaaaaaaaactacaaaacaggga-tttttttcgtatact 505
||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct: 507 tataacaacagcaagacaaaaaaaaaaaaactacaaaacagtgattttttttcgtatact 448
Query: 506 aaaccccttacacccattcaataagatggcaacccacaatccaaaggagtgtttgttgtt 565
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaaccccttacatccattcaataagatggcaacccacaatccaaaggagtgtttgttgtt 388
Query: 566 actatcataaacagatacctagtataattgatataactgtaagtagttaatatatggttg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 actatcataaacagatacctagtataattgatataactgtaagtagttaatatatggttg 328
Query: 626 tgacgtgaggcagtttcatggcactgcaaaactg 659
|||||||||||||||||| |||||||||||||||
Sbjct: 327 tgacgtgaggcagtttcacggcactgcaaaactg 294
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1064
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1054
Effective search space: 684046
Effective search space used: 684046
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
