MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-543H04
Chromosome	5 (Build37)
Map Location	118,097,156 - 118,097,724
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Gm1684, LOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2
Downstream gene	Nos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162, Thrap2
Link	Open Mouse BAC browser

Click to get alignment info.

name	Gm1684 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381709 MGI:2686530
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	LOC665073 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665073
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 84 ESTs, 1 Protein pseudo : _no_value

name	Suds3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71954 MGI:1919204
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Taok3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330177 MGI:3041177
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pebp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23980 MGI:1344408
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042313 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042313
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC100039359 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039359
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	BC023744 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231668 MGI:2448533
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667175 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667175
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 28 ESTs, 5 Proteins pseudo : _no_value

name	Wsb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59043 MGI:2144041
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rfc5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72151 MGI:1919401
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ksr2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:333050 MGI:3610315
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nos1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18125 MGI:97360
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fbxo21 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231670 MGI:1924223
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tesc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57816 MGI:1930803
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fbxw8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231672 MGI:1923041
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hrk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12123 MGI:1201608
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem118 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269695 MGI:2442859
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2410131K14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76792 MGI:1924042
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665162 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665162
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins pseudo : _no_value

name	Thrap2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76199 MGI:2670178
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm1684 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254539 GeneID:381709 MGI:2686530
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : gene model 1684, (NCBI) transcript_id : XM_001472646.1

name	Suds3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31581562 GeneID:71954 MGI:1919204
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : suppressor of defective silencing 3 homolog (S. cerevisiae) transcript_id : NM_178622.3

name	Taok3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486800 GeneID:330177 MGI:3041177
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TAO kinase 3 transcript_id : NM_001081308.1

name	Pebp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84794551 GeneID:23980 MGI:1344408
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylethanolamine binding protein 1 transcript_id : NM_018858.2

name	LOC100039359 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254542 GeneID:100039359
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : hypothetical protein LOC100039359 transcript_id : XM_001472751.1

name	BC023744 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142345853 GeneID:231668 MGI:2448533
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC023744 transcript_id : NM_001033311.2

name	Wsb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369522 GeneID:59043 MGI:2144041
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat and SOCS box-containing 2 transcript_id : NM_021539.4

name	Rfc5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110625923 GeneID:72151 MGI:1919401
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : replication factor C (activator 1) 5 transcript_id : NM_028128.1

name	Ksr2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131065 GeneID:333050 MGI:3610315
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kinase suppressor of ras 2 transcript_id : NM_001034873.2

name	Nos1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130618 GeneID:18125 MGI:97360
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nitric oxide synthase 1, neuronal transcript_id : NM_008712.2

name	Fbxo21 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371789 GeneID:231670 MGI:1924223
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : F-box protein 21 transcript_id : NM_145564.3

name	Tesc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130497 GeneID:57816 MGI:1930803
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tescalcin transcript_id : NM_021344.3

name	Fbxw8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:120407053 GeneID:231672 MGI:1923041
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : F-box and WD-40 domain protein 8 transcript_id : NM_172721.2

name	Hrk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87299645 GeneID:12123 MGI:1201608
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : harakiri, BCL2 interacting protein (contains only BH3 domain) transcript_id : NM_007545.2

name	Tmem118 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381588 GeneID:269695 MGI:2442859
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 118 transcript_id : NM_172998.2

name	2410131K14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486988 GeneID:76792 MGI:1924042
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2410131K14 gene transcript_id : NM_001081236.1

name	Thrap2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142359934 GeneID:76199 MGI:2670178
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thyroid hormone receptor associated protein 2 transcript_id : NM_172424.3

name	Gm1684 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254540 GeneID:381709 MGI:2686530
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472696.1

name	Suds3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559849 GeneID:71954 MGI:1919204
definition	GO_component : GO:0016580 - Sin3 complex [Evidence IDA] GO_function : GO:0042826 - histone deacetylase binding [Evidence IDA]; GO:0042802 - identical protein binding [Evidence IPI] GO_process : GO:0016568 - chromatin modification [Evidence IEA]; GO:0016481 - negative regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : RIKEN cDNA 2400003N08 protein_id : NP_848737.2

name	Taok3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486801 GeneID:330177 MGI:3041177
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA] codon_start : 1 product : TAO kinase 3 protein_id : NP_001074777.1

name	Pebp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794552 GeneID:23980 MGI:1344408
definition	GO_component : GO:0009986 - cell surface [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004866 - endopeptidase inhibitor activity [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA] GO_process : GO:0048240 - sperm capacitation [Evidence IDA] codon_start : 1 product : phosphatidylethanolamine binding protein 1 protein_id : NP_061346.2

name	LOC100039359 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254543 GeneID:100039359
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472801.1

name	BC023744 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701814 CCDS:CCDS19603.1 GeneID:231668 MGI:2448533
definition	codon_start : 1 product : hypothetical protein LOC231668 protein_id : NP_001028483.1

name	Wsb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982686 CCDS:CCDS19604.1 GeneID:59043 MGI:2144041
definition	GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 note : WD-40-repeat-containing protein with a SOCS box 2 product : WSB-2 protein protein_id : NP_067514.2

name	Rfc5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625924 GeneID:72151 MGI:1919401
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006260 - DNA replication [Evidence IEA] codon_start : 1 note : replication factor C, 36 kDa product : replication factor C 5 protein_id : NP_082404.1

name	Ksr2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702215 CCDS:CCDS19605.1 GeneID:333050 MGI:3610315
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : kinase suppressor of ras 2 protein_id : NP_001030045.1

name	Nos1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6724321 CCDS:CCDS19606.1 GeneID:18125 MGI:97360
definition	GO_component : GO:0005739 - mitochondrion [Evidence ISS]; GO:0045202 - synapse [Evidence IDA] GO_function : GO:0005516 - calmodulin binding [Evidence IEA]; GO:0009055 - electron carrier activity [Evidence IEA]; GO:0050660 - FAD binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0004517 - nitric-oxide synthase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0006809 - nitric oxide biosynthesis [Evidence IEA]; GO:0006941 - striated muscle contraction [Evidence IMP] codon_start : 1 note : neuronal nitric oxide synthase product : nitric oxide synthase 1, neuronal protein_id : NP_032738.1

name	Fbxo21 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21704134 CCDS:CCDS19607.1 GeneID:231670 MGI:1924223
definition	GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : F-box only protein 21 protein_id : NP_663539.1

name	Tesc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981125 CCDS:CCDS19608.1 GeneID:57816 MGI:1930803
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] [Evidence ISS]; GO:0030027 - lamellipodium [Evidence ISS] [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0001726 - ruffle [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IDA] [Evidence IEA] [Evidence ISS]; GO:0000287 - magnesium ion binding [Evidence IDA]; GO:0019212 - phosphatase inhibitor activity [Evidence IDA]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0006883 - sodium ion homeostasis [Evidence ISS] codon_start : 1 product : tescalcin protein_id : NP_067319.2

name	Fbxw8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:120407054 CCDS:CCDS19609.1 GeneID:231672 MGI:1923041
definition	GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : F-box protein FBX29 protein_id : NP_766309.2

name	Hrk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6671636 GeneID:12123 MGI:1201608
definition	GO_process : GO:0006915 - apoptosis [Evidence IEA] codon_start : 1 note : BH3 interacting (with BCL2 family) domain, apoptosis agonist product : harakiri protein_id : NP_031571.1

name	Tmem118 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370504 CCDS:CCDS19611.1 GeneID:269695 MGI:2442859
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC269695 protein_id : NP_766586.1

name	2410131K14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486989 GeneID:76792 MGI:1924042
definition	codon_start : 1 product : hypothetical protein LOC76792 protein_id : NP_001074705.1

name	Thrap2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51100966 GeneID:76199 MGI:2670178
definition	GO_component : GO:0000119 - mediator complex [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006366 - transcription from RNA polymerase II promoter [Evidence IC] codon_start : 1 exception : unclassified translation discrepancy product : thyroid hormone receptor associated protein 2 protein_id : NP_766012.2

name	LOC100042313 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042313
definition	number : 1 pseudo : _no_value

name	LOC665073 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254541 GeneID:665073
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 84 ESTs, 1 Protein product : similar to ubiquitin-conjugating enzyme E2E 1 pseudo : _no_value transcript_id : XR_030833.1

name	LOC667175 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254573 GeneID:667175
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 28 ESTs, 5 Proteins product : similar to ribosomal protein L27a pseudo : _no_value transcript_id : XR_034064.1

name	LOC665162 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254574 GeneID:665162
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins product : similar to Basic transcription factor 3 pseudo : _no_value transcript_id : XR_034094.1

clone name	MSMg01-355C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-099D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-207H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231A19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344I05
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-543H04.T7 (MSMg01no543_h04.b1)	MSMg01-543H04.TJ (MSMg01no543_h04.g1)
ACC	AG608981	AG608982
length	746	849
length of high quality (start - end)	571 (50 - 620)	140 (80 - 219)
definition	CHROMAT_FILE: MSMg01no543_h04.b1 PHD_FILE: MSMg01no543_h04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:49 2005	CHROMAT_FILE: MSMg01no543_h04.g1 PHD_FILE: MSMg01no543_h04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:49 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TCCTTCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC GCGGAATTCATCCCTTTTCATTCAGGAGACTGATCTACGCCTCTTACCTT GAAGGCAGCGCCCCGGTGGCTTAGCCCTCTGTCAATAGGGCCTTGATTCT GGAAGACTGAATTGGTGACTGAATGAAGGAACAACTCTGAGCCCCCCCTC CCCCCCGGGGCGGTGTCTGCACCTGTGACTTCCCTCACAACTTTCCTATG AAGAAAATTGTTCAGGGGTGGGGATGCCTGTGTTTGCAGGGAGCCAGATG ACTGGCAGACAGACCTCTTCCCACCTCTAAGATTGCTGACTTACTTATCT GCTGTATAAGGATTTTAACAGAAAGCCCTCAGGTCAGACAAAGAAAGACT CTGGGGTCGGGCACTTGGTTCTGTAACTTGGAGCTTTCTTTCTAAACTTT GGGCAAGTTCTTGCTTAAGCTCCATGGCCTTCCCTGAAGTCCTGTTTCCT CACTGGAACAACTGTGTGCTTATGATAGTAGCAGACACCCAGTAGGTGCT TCATAATGTTTTTTAAATTTTTTATTACATTTGTATGTTTGTTTCGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTAGGCCAGAGGTTAACTTTC AGGACTCAGTTTCTCCTTTCTATTTGTGGGTCTTGGGGATTAATCTTAAG TCCTCATGTTTTGGCAACCAGCACCTTTGATCAACTGCACCATATA	NNNNCCTATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGACCTTTGGGAGAGTAGTC AGTGCTCTTAACCGCTAAGGCATCTCTCCAGCTCTAAGGACATTTAAAAG AGAGTATTATGTCGATTTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGAGAGAGANANNNNNNNNNNNNTTTTNCNNTTTTTNTTT TTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTCTCTCTCTTCT CTCTCTCTGTTCCCCTCTCCCTCTTTTTTTTTTTCTTCCCCTTCCTCTCT CCTCTTCCCTTCTTTTTTTTTCTCCTTTTTCTTCTTCTCTTCTCGCCTCC TTCCCTGTTCTTCCTTTGTTGTTTTGTTCCTTCTCTTTGTTCGTTCCTTA TTCTCCTTATTTTATCTTTCTCACTCTCTTCATTCTTTCTTCTTCTTTTG TTCTTTCCTTCCTCTCTTCTTCTTACTCACTTGCTTTTTATCATGTATAT TCCTATCGCTTTCCGTATCCTTCTCCTTCCTCTTCCCTTACCTCATCCCT TATGTCTCTTTCCTTCGCTTCTCTTCATTTTTTTCATTCCCTCTTTCTTT CATTCTTCCTTCCCTCTCATTTCGTCTCTTTTTTCTCTTCCCTTTCCTTC ACATTTCCCTTGTCCTGTTCCTGTTCCTTTCCGTGCTTTCTCTTCAACTT GTTTTTTCTTTTGCTCCATTCGCGTCTTCCTTCCTTCATTCCGATTCCCC CCCCTTCTCTCCTCCCCCTACTCCTTCTGCTCTTTTCCGTTCTCCTTTC
quality values	Open. Hide. 9 10 10 9 9 9 9 11 11 15 15 22 15 24 25 28 27 27 25 17 15 10 11 11 12 12 10 10 9 15 13 13 9 8 8 8 7 8 7 8 8 8 15 15 13 13 23 22 22 28 36 47 43 28 23 22 28 32 33 30 21 21 15 13 11 21 11 13 11 11 14 21 22 28 33 33 39 37 37 39 39 47 50 48 48 48 48 48 48 48 57 57 57 57 57 59 57 57 57 57 57 57 54 48 54 54 54 54 54 59 59 57 50 50 50 50 50 57 59 59 59 59 54 54 54 57 57 57 57 57 47 47 47 47 41 42 42 42 57 48 48 48 57 41 46 46 48 48 50 57 57 50 50 50 50 57 57 57 57 57 57 57 57 57 48 52 52 57 57 57 50 46 50 41 50 37 37 37 37 43 43 52 52 52 52 57 57 57 57 43 43 35 38 43 43 43 43 52 52 52 52 57 59 59 57 57 57 57 57 57 57 57 57 57 59 59 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 52 52 52 57 59 62 62 62 62 62 62 62 62 62 62 62 62 43 43 52 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 45 52 52 62 62 62 62 62 62 62 62 62 62 62 43 39 39 43 43 52 62 62 62 62 62 62 68 62 62 62 62 44 39 39 35 39 43 43 43 43 43 52 52 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 52 52 52 62 62 62 62 62 62 62 62 54 54 62 57 57 45 45 45 57 44 43 35 35 39 43 43 39 42 42 41 41 41 43 43 57 52 52 52 57 57 57 57 57 57 57 57 57 52 43 43 28 23 17 17 28 38 38 57 52 52 52 57 57 57 52 52 52 57 57 57 54 54 57 57 52 57 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 43 43 33 33 33 42 42 57 57 59 57 57 57 57 57 57 48 43 39 41 43 47 43 43 30 30 18 27 27 59 59 68 59 57 57 44 44 30 30 30 44 44 47 43 43 59 44 44 32 32 30 44 40 44 30 25 23 23 23 23 25 33 36 43 42 39 35 35 35 59 59 59 43 43 39 39 32 39 39 39 32 24 20 20 15 28 24 35 32 32 28 32 33 36 22 22 28 26 36 27 27 15 15 17 30 30 25 28 30 59 39 48 48 48 48 48 48 48 59 59 48 31 26 15 15 13 23 30 39 43 43 46 46 57 23 21 10 10 10 21 27 39 32 24 12 12 12 18 18 28 28 23 23 23 23 23 23 25 25 28 42 42 32 31 21 20 20 15 12 9 11 11 19 18 23 13 11 11 17 17 19 15 15 20 25 25 17 10 10 10 10 12 10 10 10 11 13 30 23 28 22 14 12 13 15 15 16 12 15 21 24 22 24 28 30 30 30 22 11 11 8 8 8 8 8 9 13 15 21 22 22 30 30 25 22 24 16 16 14 16 10 8 8 8 8 10 11 9 9 9 22 18 28 12 10 8 11 8 9 9 9 9 6 6 8 10 10 8 8 8 8 13 14 11 11 15 19 17 22 10 8 8 8 8 8 8 16 11 11 12 15 19 23 29 23 18	Open. Hide. 0 0 0 0 3 6 6 8 15 9 8 8 8 10 22 22 22 14 25 25 26 31 39 37 37 37 37 37 29 31 37 25 23 10 6 6 6 6 6 7 6 9 10 10 10 23 18 21 13 16 26 34 36 36 33 41 33 33 42 41 28 23 12 10 9 8 8 8 9 9 14 30 37 22 25 28 28 28 28 33 36 36 48 48 50 57 59 59 59 53 53 53 53 53 57 57 57 57 50 68 68 68 68 57 59 59 68 68 68 59 59 54 54 54 59 48 68 57 57 57 54 57 57 57 57 59 47 47 47 47 57 57 68 68 68 68 68 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 51 57 57 57 46 46 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 46 39 37 37 28 21 19 16 16 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 3 18 18 3 0 3 0 0 3 8 9 17 3 0 3 18 12 11 11 11 15 12 14 11 15 9 9 8 13 11 15 13 10 10 13 13 8 8 10 13 13 10 9 9 10 8 10 11 10 12 9 8 8 8 8 10 10 8 6 8 8 9 10 10 12 10 8 8 8 8 8 10 10 8 8 8 8 8 13 8 6 6 6 8 13 21 19 15 10 10 10 11 15 15 8 8 8 11 9 8 8 10 7 9 11 11 15 10 11 11 14 10 10 8 8 8 10 10 10 11 12 8 8 8 8 10 10 10 10 8 8 8 17 23 32 23 18 9 8 8 8 8 10 15 15 15 10 10 8 10 8 8 8 8 8 8 10 10 11 11 11 12 12 10 10 9 6 10 7 6 8 8 8 8 8 8 8 8 6 6 8 8 9 10 9 9 9 12 10 16 15 10 10 10 10 13 11 11 11 8 8 8 8 8 9 9 6 8 8 8 10 8 10 10 8 10 8 8 8 8 8 8 8 6 6 6 8 8 11 16 13 11 11 11 8 8 8 8 8 10 12 11 11 11 10 7 7 6 6 8 8 9 9 10 10 8 8 6 6 10 12 12 12 10 10 9 8 8 8 8 8 8 12 10 10 11 13 12 12 10 8 10 10 10 13 10 12 14 21 10 8 8 8 8 8 8 8 10 10 6 7 8 8 13 10 10 10 10 10 8 9 8 8 6 6 6 6 9 8 8 9 8 8 8 8 8 8 10 9 10 8 8 8 8 8 8 10 8 8 10 10 10 8 12 12 10 9 9 7 8 8 10 11 11 7 6 6 8 10 10 8 6 6 8 8 8 8 8 8 8 10 10 8 8 10 8 8 8 12 8 6 7 6 6 6 8 10 10 10 10 13 11 12 12 12 15 16 25 22 17 13 13 11 11 10 11 11 13 12 19 10 10 8 8 8 9 8 8 8 8 8 17 11 11 11 11 12 17 19 24 14 14 15 13 8 8 8 9 12 8 8 8 10 10 10 13 12 14 15 12 13 8 8 8 8 8 13 10 11 9 8 13 6 6 8 13 6 6 6 8 8 8 8 8 8 8 8 8 8 8 10 10 10 10 10 10 10 10 8 6 6 8 6 10 17 24 10 8 8 8 8 8 8 8 8 8 8 8 8 10 10 6 6 6 8 10 10 12 12 16 16 12 13 9 9 9 10 8 8 8 8 8 10 8 8 8 8 8 6 6 6 7 8 8 10 10 10 12 16 15 15 15 11 9 9 9 9 9 8 8 8 8 8 8 8 8 9 10 9 10 12 10 13 10 8 8 8 8 8 10 10 10 11 11 12 11 8 8 8 8 10 10 11 8 8 8 8 8 8 11 11 19 8 6 6 6 6 10 8 13 10 10 11 11 11 11

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no543_h04.b1 MSMg01no543_h04.b1 CHROMAT_FILE:
MSMg01no543_h04.b1 PHD_FILE: MSMg01no543_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:49 2005
         (571 letters)



>mm_chr5_118096978_118097949
          Length = 972

 Score = 1046 bits (541), Expect = 0.0
 Identities = 562/569 (98%), Gaps = 1/569 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatcccttttcattcaggagactgatctacgcctcttaccttgaaggcagcgcc 63
           ||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 747 ggaattcatccctctacattcaggagactgatctatgcctcttaccttgaaggcagcgcc 688

                                                                       
Query: 64  ccggtggcttagccctctgtcaatagggccttgattctggaagactgaattggtgactga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ccggtggcttagccctctgtcaatagggccttgattctggaagactgaattggtgactga 628

                                                                       
Query: 124 atgaaggaacaactctgagccccccct-cccccccggggcggtgtctgcacctgtgactt 182
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 627 atgaaggaacaactctgagccccccctccccccccggggcggtgtctgcacctgtgactt 568

                                                                       
Query: 183 ccctcacaactttcctatgaagaaaattgttcaggggtggggatgcctgtgtttgcaggg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ccctcacaactttcctatgaagaaaattgttcaggggtggggatgcctgtgtttgcaggg 508

                                                                       
Query: 243 agccagatgactggcagacagacctcttcccacctctaagattgctgacttacttatctg 302
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 507 agccagatgactggcagacagacctcttcccacctctaagactgctgacttacttatctg 448

                                                                       
Query: 303 ctgtataaggattttaacagaaagccctcaggtcagacaaagaaagactctggggtcggg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctgtataaggattttaacagaaagccctcaggtcagacaaagaaagactctggggtcggg 388

                                                                       
Query: 363 cacttggttctgtaacttggagctttctttctaaactttgggcaagttcttgcttaagct 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cacttggttctgtaacttggagctttctttctaaactttgggcaagttcttgcttaagct 328

                                                                       
Query: 423 ccatggccttccctgaagtcctgtttcctcactggaacaactgtgtgcttatgatagtag 482
           || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 327 ccgtggccttccctgaagtcctgtttcctcactggaacaactgtgtgcttattatagtag 268

                                                                       
Query: 483 cagacacccagtaggtgcttcataatgttttttaaattttttattacatttgtatgtttg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cagacacccagtaggtgcttcataatgttttttaaattttttattacatttgtatgtttg 208

                                        
Query: 543 tttcgtgtgtgtgtgtgtgtgtgtgtgtg 571
           |||||||||||||||||||||||||||||
Sbjct: 207 tttcgtgtgtgtgtgtgtgtgtgtgtgtg 179


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 972
Length adjustment: 10
Effective length of query: 561
Effective length of database: 962
Effective search space:   539682
Effective search space used:   539682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information