BAC Information

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BAC

Clone NameMSMg01-543K06
Chromosome5 (Build37)
Map Location 58,601,779 - 58,602,269
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499, EG625870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543K06.T7 (MSMg01no543_k06.b1)MSMg01-543K06.TJ (MSMg01no543_k06.g1)
ACCAG609128AG609129
length736746
length of high quality
(start - end)
452 (127 - 578)515 (83 - 597)
definitionCHROMAT_FILE: MSMg01no543_k06.b1 PHD_FILE: MSMg01no543_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:04 2005CHROMAT_FILE: MSMg01no543_k06.g1 PHD_FILE: MSMg01no543_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTTCCTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTCTGTTCTGAGCCCCATTTTTAAATGGGGTTATT
TGAATTTCTGAAGCCCACCTTCTTGAGTTCTTTATATATGTTGGATATTA
CTCCCCTATCTGATTTATGATAGGTAAAGATCCTTTCCCAATCTGTTGCT
GGTCTTTTTGTCTTATTGAAGGTGTCTTTTGCCTTGCATAAGCTTTGGAG
TTTCATGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTG
CTGTTCTATTCAGGAATTTTTTTCCTGTGCCCATATCTTCAAGGCTTTTC
CCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTC
CTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGTATGGATCAT
TTCGCATTCTTCTTCATGATAACAACCTGTTGTGCCAGCACCATTTGTTG
AAAATGCTGTCTTTCTTCCACTGGATGGTTTAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATATCCTTAAGCTGGAAAGAACCCA
GATGCCCCTCTACAGAGGAACGGATACAGAAAATGTGGTACTTTTTCATT
ATGGAGTATTTACTACTCAGCTATTATAAGAATGATTTTCTGAAATTCCT
ATCCCAATGGATGGACCTTTAGGGCATCTTTCTGAG
TTTTCTTCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGTCTCGTAGAGTTTT
GGAGATAGTAGGTTAGGTGGTCATGATTGGCTCAGATCTAGTATCTGTTT
TAGAAATATAAGCTGAACTTAGTCACCAGTGCATATATTGGTCTCAAGAT
AACTTAGTACCACAGCCCATGTTTTCCTTCTGTGCCTGCATTTCTTACTA
GGAATAGCATCTACGATGAACCAGAATAGCATGTAGAAAATGTGCCATCT
TTTAAATGTGTGAGTAAACAATCTTTCAGTAATGGCAGAGAGAGAGAGAG
ACAGACAGACAGACAGACAGACAGAGACAGAGAGAGAGGGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAACTAGATTCTTGATGACATCATTTAGCCA
CTGGGTGAAGAATGGAACTGACTTCTTAATGACTTAGATGACAAATGTTT
CTCTCATTCAATCTTCTTTATTTAATATTCTGAAATGGTTTTTAAAACAG
AAGAAATGCTACAAATGTCTACCTAAACAGTCCAAAGATGCACTACAGAA
AATGCATATGTATGATAATTAGAAAATCCATTAATCATATGAAATATGAT
AAATTATACATAATTATGGCCTATAATATTATTAAATTCAGAAAAATCAA
TATATAAATTACTAATATATTTGGTGATTCACAATTTCTAGCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_k06.g1 MSMg01no543_k06.g1 CHROMAT_FILE:
MSMg01no543_k06.g1 PHD_FILE: MSMg01no543_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:04 2005
         (515 letters)



>mm_chr5_58601579_58602493
          Length = 915

 Score =  808 bits (418), Expect = 0.0
 Identities = 480/516 (93%), Gaps = 26/516 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgtctcgtagagttttggagatagtaggttaggtggtcatgattggctcagatctagt 60
           |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 201 aatgtctcatagagttttggagattgtaggttaggtggtcatgattggctcagatatagt 260

                                                                       
Query: 61  atctgttttagaaatataagctgaacttagtcaccagtgcatatattggtctcaagataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctgttttagaaatataagctgaacttagtcaccagtgcatatattggtctcaagataa 320

                                                                       
Query: 121 cttagtaccacagcccatgttttccttctgtgcctgcatttcttactaggaatagcatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttagtaccacagcccatgttttccttctgtgcctgcatttcttactaggaatagcatct 380

                                                                       
Query: 181 acgatgaaccagaatagcatgtagaaaatgtgccatcttttaaatgtgtgagtaaacaat 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgatgaaccagaatagcatatagaaaatgtgccatcttttaaatgtgtgagtaaacaat 440

                                                                       
Query: 241 ctttca-gtaatggcagagagagagagagacagacagacagacagacagacagagacaga 299
           |||||| | ||||||||||||||||||||| ||| ||| ||| |||              
Sbjct: 441 ctttcaag-aatggcagagagagagagagatagatagatagataga-------------- 485

                                                                       
Query: 300 gagagagggagagagagagagagagagagagagagagagaactagattcttgatgacatc 359
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ----------gagagagagagagagagagagagagagagaactagattcttgatgacatc 535

                                                                       
Query: 360 atttagccactgggtgaagaatggaactgacttcttaatgacttagatgacaaatgtttc 419
           |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 536 atttagccactgggtgaagactggaactgacttcttaatgactgagatgacaaatgtttc 595

                                                                       
Query: 420 tctcattcaatcttctttatttaatattctgaaatggtttttaaaacagaagaaatgcta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tctcattcaatcttctttatttaatattctgaaatggtttttaaaacagaagaaatgcta 655

                                               
Query: 480 caaatgtctacctaaacagtccaaagatgcactaca 515
           ||||||||||||||||||||||||||||||||||||
Sbjct: 656 caaatgtctacctaaacagtccaaagatgcactaca 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)