CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATCTTTCCCCACTTTTATCATGAATGGGTGTTGGATCTTGTC
AAATGCTTTTTCTGAATCTCACGAGATGATCATGTGGTTTTTGTCTTTGA
GTTTGTTTATATAATGGATTACATTGATGGATTTTCGTGTATTAAACCAT
CCCTGCATCCCTGGAATCAAACCTACTTGGTCAGGATGGATGATTGCTTT
AATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCAT
CGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCT
TTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGG
TAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAACTGGAA
TTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACACATCTGGT
CCTGGGCTTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTTCTT
TAGGTGATATGGGACTGTTTAGATGGTCAACTTGATCCTGATTCAACTTT
GGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAG
TTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGGTTTGGATTT
CTTCAGGATCTGTTGTTATGTCTCCCTTTTCATTTCTGATTTTGTTAATT
AGGATTTTGTCCC

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTAGTTTGTGAGAGATCATGTGTA
TTTGGTAATATTCTACAAACTCTAAAACACGTGTATTTAAACCAATAGTT
CTATTTATGAAGATTTATTGTGTACAAATGTTTATACTGACAAATAATAT
ATTTGCCAAAAAACAAGGTATGAGATATGGGAGTTCTCTGGTGGGATTTT
AAGGGGTCACTTAAGTATTCTATCATATCATCTGCAAATAGTGCAGATAT
TTTGACTTCTTCTTTTCCAATTTGTACCCCTATGACCTCTGCTTATGTCT
AATTGTTCTGGCTACCAGAGAATTCCTACAGCTAATAAACAACTCCAGCA
AAGTGGCTGGATATAAAATTAACTCAAACAAATCAGTAGCCTTCCTCTAC
TCAAAGGATAAACAGTCTGAGAAAGAAATTAGGGAAATGACACCCTTCAT
AATAGTCACAAATAATATAAAATACCTTGGTATGACCTAAACCAAGCAAG
TGAAAGATCTGTATGATAAGAACTTCAAATCTCTGGAGAAAGAAATTGAA
GAAGATCTCAGAAGATGGAAAGATCTCCCATGCTTATGGATTGGCATGAT
TAATATAGTGAAATTGGTCATTTGCCACAAGCAATCTATAGATTCAATGC
AATCCCCATCAAAATTTGAACTCAATTCTTCATAGAGTTAAAAAGAGCAG
CTTGCAAATTCATTTGGAATAAA

Query= MSMg01no543_o21.g1 MSMg01no543_o21.g1 CHROMAT_FILE:
MSMg01no543_o21.g1 PHD_FILE: MSMg01no543_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:26 2005
         (698 letters)



>mm_chr5_42953650_42954747
          Length = 1098

 Score = 1301 bits (673), Expect = 0.0
 Identities = 691/697 (99%), Gaps = 1/697 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagtttgtgagagatcatgtgtatttggtaatattctacaaactctaaaacacgtgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagtttgtgagagatcatgtgtatttggtaatattctacaaactctaaaacacgtgta 260

                                                                       
Query: 61  tttaaaccaatagttctatttatgaagatttattgtgtacaaatgtttatactgacaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaaccaatagttctatttatgaagatttattgtgtacaaatgtttatactgacaaat 320

                                                                       
Query: 121 aatatatttgccaaaaaacaaggtatgagatatgggagttctctggtgggattttaaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatatatttgccaaaaaacaaggtatgagatatgggagttctctggtgggattttaaggg 380

                                                                       
Query: 181 gtcacttaagtattctatcatatcatctgcaaatagtgcagatattttgacttcttcttt 240
           |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 381 gtcacttaagtattctatcatatcattt-caaatagtgcagatattttgacttcttcttt 439

                                                                       
Query: 241 tccaatttgtacccctatgacctctgcttatgtctaattgttctggctaccagagaattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tccaatttgtacccctatgacctctgcttatgtctaattgttctggctaccagagaattc 499

                                                                       
Query: 301 ctacagctaataaacaactccagcaaagtggctggatataaaattaactcaaacaaatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctacagctaataaacaactccagcaaagtggctggatataaaattaactcaaacaaatca 559

                                                                       
Query: 361 gtagccttcctctactcaaaggataaacagtctgagaaagaaattagggaaatgacaccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtagccttcctctactcaaaggataaacagtctgagaaagaaattagggaaatgacaccc 619

                                                                       
Query: 421 ttcataatagtcacaaataatataaaataccttggtatgacctaaaccaagcaagtgaaa 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 620 ttcataatagtcacaaataatataaaataccttggtgtgacctaaaccaagcaagtgaaa 679

                                                                       
Query: 481 gatctgtatgataagaacttcaaatctctggagaaagaaattgaagaagatctcagaaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gatctgtatgataagaacttcaaatctctggagaaagaaattgaagaagatctcagaaga 739

                                                                       
Query: 541 tggaaagatctcccatgcttatggattggcatgattaatatagtgaaattggtcatttgc 600
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 740 tggaaagatctcccatgcttatggattggcaagattaatatagtgaaattggtcatttgc 799

                                                                       
Query: 601 cacaagcaatctatagattcaatgcaatccccatcaaaatttgaactcaattcttcatag 660
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cacaagcaatctatagatccaatgcaatccccatcaaaatttgaactcaattcttcatag 859

                                                
Query: 661 agttaaaaagagcagcttgcaaattcatttggaataa 697
           |||||||||| ||||||||||||||||||||||||||
Sbjct: 860 agttaaaaagggcagcttgcaaattcatttggaataa 896


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)