Query= MSMg01no544_a20.b1 MSMg01no544_a20.b1 CHROMAT_FILE:
MSMg01no544_a20.b1 PHD_FILE: MSMg01no544_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:35 2005
(659 letters)
>mm_chr5_106952158_106953218
Length = 1061
Score = 857 bits (443), Expect = 0.0
Identities = 471/481 (97%), Gaps = 2/481 (0%)
Strand = Plus / Minus
Query: 181 cctcttcctcctcctcctcttcctcttcctcctcttcctcccattaaaagaattgttgga 240
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 902 cctcttcctcctcctcctcttcctcctcctcctcttcctctcattaaaagaattgttgga 843
Query: 241 ataagaatttctggaag--aaaaaaaatccaggattttgcctctcagacttcaatctaga 298
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ataagaatttctggaagaaaaaaaaaatccaggattttgcctctcagacttcaatctagg 783
Query: 299 tctgatttttttcagacattgtccgaaggtaccattattgattaggaagtgaccctggga 358
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tctgatttttttcagacattttccgaaggtaccattattgattaggaagtgaccctggga 723
Query: 359 gcaagtcactcctcacagtggaaacagtaggagcccagcacaatgctgatcagatgaatg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gcaagtcactcctcacagtggaaacagtaggagcccagcacaatgctgatcagatgaatg 663
Query: 419 tctgtgttcaacccttacgggcccagtgccgtcataagattctcttcccctaatagtttt 478
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 662 tctgtgttcaacccttacgggcccagtgccgtcataagattctgttcccctaatagtttt 603
Query: 479 ccagggttgtgctgaaagggttctgtcaatcaaatctgaaaatctgcttaacatcctaac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ccagggttgtgctgaaagggttctgtcaatcaaatctgaaaatctgcttaacatcctaac 543
Query: 539 tggggttaacccagtgcagctactcaggagttattgttcctggttttgacatcatcaacg 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tggggttaacccagtgcagctactcaggagttattgttcctggttttgacatcatcaaca 483
Query: 599 agcctcgatggcaaatgcgtcattagaatagatgctcaccgctgatatatatttttaata 658
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 482 agccttgatggcaaatgcgtcattagaatggatgctcaccgctgatatatatttttaata 423
Query: 659 t 659
|
Sbjct: 422 t 422
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1061
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1051
Effective search space: 682099
Effective search space used: 682099
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_a20.g1 MSMg01no544_a20.g1 CHROMAT_FILE:
MSMg01no544_a20.g1 PHD_FILE: MSMg01no544_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:36 2005
(623 letters)
>mm_chr5_106806906_106807928
Length = 1023
Score = 1174 bits (607), Expect = 0.0
Identities = 619/623 (99%)
Strand = Plus / Plus
Query: 1 aaattaaagtcacattgaaactgtgccagtcccatgagccacacctcattctggacatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaattaaagtcacattgaaactgtgccagtcccatgagccacacctcattctggacatgg 260
Query: 61 caagagtttgaagccaagaacaaatttgttaaccccataaaccatcagtcacatgacacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagagtttgaagccaagaacaaatttgttaaccccataaaccatcagtcacatgacacg 320
Query: 121 cagtgcaacgaactggaatgtgtcatgtgcccatctatgattgataaacccattcctgag 180
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 cagtgcaatgaactggaatgtgtcatgtgcccatctatgatcgataaacccattcctgag 380
Query: 181 gtttttcagggcgtggggtgtttgtctgtggttctgtggttgagcctcaggacttattct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttttcagggcgtggggtgtttgtctgtggttctgtggttgagcctcaggacttattct 440
Query: 241 gcaaggccagcacttggccgcagagccacattacttcttattggcagatgactttcctga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaggccagcacttggccgcagagccacattacttcttattggcagatgactttcctga 500
Query: 301 gttgcccaggctggccttgactctgcagcatttatagaccttaggatcttccagcctcag 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgcccaggctggccttgactctgcagcatttatagaccttaggatcttccagcctcag 560
Query: 361 tctccctagctgctgtaattataagcctgcagcatacatcgctataatttccatttcaca 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctccctagctgctataattataagcctgcagcatacatcgctataatttccatttcaca 620
Query: 421 ataaagaagcttttgcatgtgggagaggtttacattataacagtcattttaaataaattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataaagaagcttttgcatgtgggagaggtttacattataacagtcattttaaataaattt 680
Query: 481 gtgaggttttatttagactgggtctcatgtacattgacctcaaactaactatataaccaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgaggttttatttagactgggtctcatgtacattgacctcaaactaactatataaccaa 740
Query: 541 ggctagccttgaactatcttcttgctaccacctcccaagggctgggatcttgagcacctg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggctagccttgaactatcttcttgctaccacctcccaagggctgggatcttgagcacctg 800
Query: 601 ccacacccaaagaagcctcaaat 623
|||||||||||||||||||||||
Sbjct: 801 ccacacccaaagaagcctcaaat 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
