Query= MSMg01no544_a22.b1 MSMg01no544_a22.b1 CHROMAT_FILE:
MSMg01no544_a22.b1 PHD_FILE: MSMg01no544_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:36 2005
(693 letters)
>mm_chr5_67926074_67927164
Length = 1091
Score = 1236 bits (639), Expect = 0.0
Identities = 677/695 (97%), Gaps = 11/695 (1%)
Strand = Plus / Minus
Query: 8 ttctaggatagccacggctacacagagaaattctgttccaaaaacaa---------aata 58
|||||||| |||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 1091 ttctaggaaagccacggctacacagagaaattctgtttcaaaaacaaaataataataata 1032
Query: 59 ataataataataataataataataattaatggtgattacatcaggctagcaggtacctgt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 ataataataataataataataataattaatggtgattacatcaggctagcaggtacctgt 972
Query: 119 ggtgaagaaatcctacatgcaatcacctctactacctgtttttattaaattaaacccaaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 ggtgaagaaatcctacatgcaatcacctctactacctgtttttattaaattaaacccaaa 912
Query: 179 ttttaaaaattaattattaagctcatattttgtgtaagactgatgtcacattctagaaac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 ttttaaaaattaattattaagctcatattttgtgtaagactgatgtcacattctagaaac 852
Query: 239 acagacactagcaattgttcttggccttatcctggctgccggaaaagacaggccagcagc 298
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 acaggcactagcaattgttcttggccttatcctggctgccggaaaagacaggccagcagc 792
Query: 299 tctcagaacacaacgctccagtgtgaagagctcacgtagaacactgtggagaacacgtgt 358
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 791 tctcagaacacaacgctccagtgtgaagagctca-gtagaacactgtggagaacacgtgt 733
Query: 359 agggagaagtattgccacagaaattccaaaatggctcagaacaacagccactttgttcct 418
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 732 agggagaagtattgccacagaaatcccaaaatggctcagaacaacagccactttgttcct 673
Query: 419 agggctatttctcttctccaaaagtccccgccccaactcagaagtgaagggatgttccca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 agggctatttctcttctccaaaagtccccgccccaactcagaagtgaagggatgttccca 613
Query: 479 ggccttatggtggctacgaactgttggtccagagctgtgttcttactgtttaatagtgga 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 612 ggccttatggtggctacgaactgttggtccagagctgtgttcttactgtttaatagcgga 553
Query: 539 tacaatggattactgtaacttgtaactccctacctgctggaggtttattctgaccctaga 598
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 552 tacaatggattactgtaacttgtaactcccta-ctgctggaggcttattctgaccctaga 494
Query: 599 atcttctttattcttctaccccagcgttcagagtcttgaaggtaccctgtacacatcctg 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gtcttctttattcttctaccccagcgttcagagtcttgaaggtaccctgtacacatcctg 434
Query: 659 gcttcgcaggtccatccatcacctcgataactaac 693
|||||||||||||||||||||||||||||||||||
Sbjct: 433 gcttcgcaggtccatccatcacctcgataactaac 399
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1091
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1081
Effective search space: 738323
Effective search space used: 738323
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_a22.g1 MSMg01no544_a22.g1 CHROMAT_FILE:
MSMg01no544_a22.g1 PHD_FILE: MSMg01no544_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:36 2005
(636 letters)
>mm_chr5_67876395_67877430
Length = 1036
Score = 1180 bits (610), Expect = 0.0
Identities = 628/634 (99%)
Strand = Plus / Plus
Query: 1 tcttgtaaaaagtgtatatttaggatgctccagtttgaacatcacttccttctagaaaca 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttataaaaagtgtatatttaggatgctccagtttgaacatcacttccttctagaaaca 260
Query: 61 accactagcctttcctttctaaagtgacattaccattttttctagcgtcatccccacttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accactagcctttcctttctaaagtgacattaccattttttctagcgtcatccccacttt 320
Query: 121 cttcattactgtgaaattatcttgttcgttcttgtaggtgtgggctctttaaatctcgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcattactgtgaaattatcttgttcgttcttgtaggtgtgggctctttaaatctcgac 380
Query: 181 tctggcatcatagccatgtctgcagagagagcctcacctgtcttacacacttgacatttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggcatcatagccatgtctgcagagagagcctcacctgtcttacacacttgacatttg 440
Query: 241 aatgtgaacagggcatggcatcatggggagatttaatattttggaacaagaagtgatcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgtgaacagggcatggcatcatggggagatttaatattttggaacaagaagtgatcat 500
Query: 301 actttattacttgaagaaaatttaagtggctcccatttggatcataataaatgaaatcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actttattacttgaagaaaatttaagtggctcccatttggatcataataaatgaaatcca 560
Query: 361 aaattattttgattagtgaggtatacctaaccctggcagagtaattacttttcttattgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaattattttgattagtgaggtatacctaaccctggcagagtaattacttttcttattgc 620
Query: 421 tgtgacccgacacctgaaaagaagcaaattagaaagggtttggttctgctcatggtttga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgacccgacacctgaaaagaagcaaattagaaagggtttggttctgctcatggtttga 680
Query: 481 ggggactgttcgtgagagagggcgtggcagcaggaacagctccgaagtgcttgtgttagg 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 681 ggggactgttcgtgagagagggcgtggcagcagggacagctccgaagtgcttgcgttagg 740
Query: 541 aggagtgtaagcgattggttacactgatccacagtcagaaaggagagagaccggatctag 600
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggagtgtaagcaattggttacactgatccacagtcagaaaggagagagaccggatctag 800
Query: 601 tgtcaaccaacttccttcttgttcctttctcctc 634
|||||| ||||||||||| |||||||||||||||
Sbjct: 801 tgtcaatcaacttccttcgtgttcctttctcctc 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
