TGTGTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTATTAATGAAATCTGAATTTACTAAGTAATGAGAAAA
ATTTTCCTTCAAAGAAACTTAATAGTACTGACTGTAACAAAGGTTTAAAT
GGATTAGAATATACTGTATTAATATTTTTGATAGGCAGGTAAAACAATTT
ATATATAAAACACAGTGCAGTTTTTCTGGATCTTGGAGAAATGATAAAAC
TTTATCATAGTTGGAGTTCTCTTTTTTCTTTTTTCTGTTTTGTTATGAAA
GAACCAAATAGCACAGTCCATCTGGACGCTGACTCTGAAACTTTTTTCCA
CTGCAAAAATTAAGGGCTAAAGCTCCAGATGTTATGAGATAAACATACTT
CTTTTTTAAAATGAAAACTTTAATTTTAATTCTTAGAATGTTCACACTTA
ACACTCATTGAGATTTAATTAAGAAAAGATACTAATTTTATTTAGGTTAT
AGAATTAAGTTGTTTTACTGAAATTATTGGGGGTGTGTGTGTTCATGTCT
AATTGTAGGTTTTGCAAATCGATGATGTCACAATAAAAATAAGTGCTCTA
AAGGCAATCATTGACCAATTGATGATGTTTGGAATTGAGCCATTTAAAAC
CCAGAAAGTTAAGGGCGTTCAATGTGAAGGTAAAGAAATAAACTGTCATG
ATAAGCAAGAAGAAAATGATGCTGGAGAGACTGACCCAGCTAAGAGTGTT
CTGAAACTCCTCTCCGN

NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGG
CTGAGAAGCACCTGAAAAAATGTTCAGCATCTGTAATCATCAGGGAAATG
CAAATCAAACAGCCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACTACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGAT
CCCGCCATACCTCTCCTAGGCATATGTCCAGAAGATGTTCCAACTGTTAA
GAAAGACACATGCTCCTCTATGTTCATAGCAGCTTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATTGATACAGAAA
ATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGGCAGATGGATTGACCTGGAGGGCATCATCCTGA
GTGAGGTAACCCAATCACAAAATAACTCACATGATATGTACTCAGTGATA
AGTGGTATTAGCCCAGAAACTTAGAATACCCAAGGTACAAGATACAAAAC
ACATGANACTCAAGAAAAACGAAGACTAAAGTGTGGACACTTTGTCCCTT
CTTAGAA

Query= MSMg01no544_d07.b1 MSMg01no544_d07.b1 CHROMAT_FILE:
MSMg01no544_d07.b1 PHD_FILE: MSMg01no544_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:47 2005
         (687 letters)



>mm_chr5_46082134_46083220
          Length = 1087

 Score = 1284 bits (664), Expect = 0.0
 Identities = 679/684 (99%), Gaps = 2/684 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactattaatgaaatctgaatttactaagtaatgagaaaaattttccttcaaaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactattaatgaaatctgaatttactaagtaatgagaaaaattttccttcaaaga 264

                                                                       
Query: 65  aacttaatagtactgactgtaacaaaggtttaaatggattagaatatactgtattaatat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacttaatagtactgactgtaacaaaggtttaaatggattagaatatactgtattaatat 324

                                                                       
Query: 125 ttttgataggcaggtaaaacaatttatatataaaacacagtgcagtttttctggatcttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttgataggcaggtaaaacaatttatatataaaacacagtgcagtttttctggatcttg 384

                                                                       
Query: 185 gagaaatgataaaactttatcatagttggagttctcttttttcttttttctgttttgtta 244
           || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 385 gacaaatgataaaactttatcatagttggagttcttttttttcttttttctgttttgtta 444

                                                                       
Query: 245 tgaaagaaccaaatagcacagtccatctggacgctgactctgaaacttttttccactgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgaaagaaccaaatagcacagtccatctggacgctgactctgaaacttttttccactgca 504

                                                                       
Query: 305 aaaattaagggctaaagctccagatgttatgagataaacatacttcttttttaaaatgaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaattaagggctaaagctccagatgttatgagataaacatacttcttttttaaaatgaa 564

                                                                       
Query: 365 aactttaattttaattcttagaa-tgttcacacttaacactcattgagatttaattaaga 423
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 565 aactttaattttaattcttagaaatgttcacacttaacactcattgagatttaattaaga 624

                                                                       
Query: 424 aaagatactaattttatttaggttatagaattaagttgttttactgaaattattgggggt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 625 aaagatactaattttatttaggttatagaattaagttgttttactgaaattattggggg- 683

                                                                       
Query: 484 gtgtgtgttcatgtctaattgtaggttttgcaaatcgatgatgtcacaataaaaataagt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtgtgtgttcatgtctaattgtaggttttgcaaatcgatgatgtcacaataaaaataagt 743

                                                                       
Query: 544 gctctaaaggcaatcattgaccaattgatgatgtttggaattgagccatttaaaacccag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gctctaaaggcaatcattgaccaattgatgatgtttggaattgagccatttaaaacccag 803

                                                                       
Query: 604 aaagttaagggcgttcaatgtgaaggtaaagaaataaactgtcatgataagcaagaagaa 663
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 804 aaagttaagggcgttcaatgtgaaggtgaagaaataaactgtcatgataagcaagaagaa 863

                                   
Query: 664 aatgatgctggagagactgaccca 687
           ||||||||||||||||||||||||
Sbjct: 864 aatgatgctggagagactgaccca 887


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)