Query= MSMg01no544_j14.b1 MSMg01no544_j14.b1 CHROMAT_FILE:
MSMg01no544_j14.b1 PHD_FILE: MSMg01no544_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:19 2005
(692 letters)
>mm_chr5_15692629_15693721
Length = 1093
Score = 1257 bits (650), Expect = 0.0
Identities = 679/689 (98%), Gaps = 1/689 (0%)
Strand = Plus / Plus
Query: 5 gaattccctgattgagattaaatatttccataacaaagttggatgtattccgcatgggat 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattccctgattgagattaaatatttccataacaaagttggatgtattctgcatgggat 264
Query: 65 ggcatatttccctgttgctatgaggattcccttcattcctgtgccctttcatgttgagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcatatttccctgttgctatgaggattcccttcattcctgtgccctttcatgttgagaa 324
Query: 125 catacaaagacagattaaatgaagcaagatacactggaatggaatttcgtgcagcatcct 184
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 325 catacaaagacagattaaatgaagcaagatacactagaatggaatttcgtgcagcatcct 384
Query: 185 gggaacagtggcctacattgtctcaggctcctccctgttatcttcccatactacatttta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggaacagtggcctacattgtctcaggctcctccctgttatcttcccatactacatttta 444
Query: 245 gcccatcctcaaacccataatgggtttt-aaaaaatgtgtctttccctaatacatatatt 303
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 gcccatcctcaaacccataatgggttttaaaaaaatgtgtctttccctaatacatatatt 504
Query: 304 cttatcatataaccggtatcaatcaacgagctctgttcattcttgtgacaggtcaggatc 363
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 cttatcatataactggtatcaatcaacaagctctgttcattcttgtgacaggtcaggatc 564
Query: 364 tttactatctatgcctttttctcttccaaacatccagtaaccataactgagctaggacta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttactatctatgcctttttctcttccaaacatccagtaaccataactgagctaggacta 624
Query: 424 aattgagggaaacaaactggacagatgggacagtcacctgatctcactggtgttgtttct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aattgagggaaacaaactggacagatgggacagtcacctgatctcactggtgttgtttct 684
Query: 484 caattgttcttcactattcctgcctgagatgtgcttcccaccttatctatacacggtgct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgattgttcttcactattcctgcctgagatgtgcttcccaccttatctatacacggtgct 744
Query: 544 gactatgtgagatggtgcatggagagaagcaggcactgttgtaagaatctcttggggttg 603
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gactatgtgtgatggtgcatggagagaagcaggcactgttgtaagaatctcttggggttg 804
Query: 604 ctgggcaaacccctttgtctatacaacatgttgttcctcacaatggttcangctctgagt 663
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 805 ctgggcaaacccctttgtctatactacatgttgttcctcacaatggttcaggctctgagt 864
Query: 664 acatgaaggaacatattgctcaaggaaag 692
|||||||||||||||||||||||||||||
Sbjct: 865 acatgaaggaacatattgctcaaggaaag 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1093
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1083
Effective search space: 738606
Effective search space used: 738606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_j14.g1 MSMg01no544_j14.g1 CHROMAT_FILE:
MSMg01no544_j14.g1 PHD_FILE: MSMg01no544_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:19 2005
(621 letters)
>mm_chr5_15827655_15828674
Length = 1020
Score = 1038 bits (537), Expect = 0.0
Identities = 596/621 (95%), Gaps = 13/621 (2%)
Strand = Plus / Minus
Query: 1 tatcctccagtcagctctagtcagctatttccttgacaagaaacagaacaaatgatacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tatcctccagtcagctctagtcagctatttccttgacaagaaacagaacaaatgatacac 590
Query: 61 tcacaactcaaaatatttgtcccatagagtccatgacaacaaagcaaaacaagacactaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tcacaactcaaaatatttgtcccatagagtccatgacaacaaagcaaaacaagacactaa 530
Query: 121 caaaacccaaaactattaatggtagtaaaaataatttttttaaagaacatgtctattttt 180
||||| ||||| |||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 529 caaaaaccaaagctattaatggtagtaaaaataatttttttaaagaacatgttta-tttt 471
Query: 181 tttcctcgattttccttaagaatctaaaaactggagcgtagaagggatagtttgtcctag 240
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 470 tttcctcgattttccttaagaatctaaaaactggggcatagaagggatagtttgtcctag 411
Query: 241 ataaattttcttgactgaaacaaaaaagatgatgaaataaatattgttgaaatgtgcatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ataaattttcttgactgaaacaaaaaagatgatgaaataaatattgttgaaatgtgcatt 351
Query: 301 atacaaataaatataacactggaaaagcccctgcaaagtttttgttgttttggtttttgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atacaaataaatataacactggaaaagcccctgcaaagtttttgttgttttggtttttgt 291
Query: 361 tgttgtttttagcttcttttgtagcaagcctgccttgggaatggggttgtaaaagaaggc 420
|||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 290 tgttgtttgtagcttcttttgtagcaagcctgccttggggatggggttgtagaagaaggc 231
Query: 421 tgggcctccttgggcctatggagacaacagcttacaataggatcagtgcttatataaaga 480
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 230 tgggtctccttgggcctatggagacaacagcttacaatgggatcagtgcttatataaaga 171
Query: 481 agcctgagagtctcctcttggctcctcctaccatgtgatattagaggaaaaaactgtcta 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 agcccgagagtctcctcttggctcctcctaccatgtgatattagaggaaaaaactgtcta 111
Query: 541 ctgaggaggatcatacactgaacccacccatgccttagtccttagtcctacacttctgag 600
||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 110 ctgaggaggatcatacactgaacccacccatgccttagt-ct------tacacttctgag 58
Query: 601 c----cacccccccccccccg 617
| | |||||| |||||||
Sbjct: 57 cgtgtc-ccccccaccccccg 38
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1020
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1010
Effective search space: 617110
Effective search space used: 617110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
