Query= MSMg01no544_l03.b1 MSMg01no544_l03.b1 CHROMAT_FILE:
MSMg01no544_l03.b1 PHD_FILE: MSMg01no544_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:26 2005
(581 letters)
>mm_chr5_90200923_90201905
Length = 983
Score = 1104 bits (571), Expect = 0.0
Identities = 577/579 (99%), Gaps = 2/579 (0%)
Strand = Plus / Plus
Query: 5 gaattctgagatatgtcagatccttgcctctcgtgcctctcccaacccataagatccatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgagatatgtcagatccttgcctctcgtgcctctcccaacccataagatccatt 264
Query: 65 ctatcacaaaaccctatcattttcactccaatttccactcgcatctggcactgttgctgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctatcacaaaaccctatcattttcactccaatttccactcgcatctggcactgttgctgt 324
Query: 125 atctcatacttgttctcttgatactcatcactattgtctaggccataatctttttttttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atctcatacttgttctcttgatactcatcactattgtctaggccataatctttttttttt 384
Query: 185 -aatttagaacaattacaaaaaaattccaactcagaaatttggcacatctgagtaggtga 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taatttagaacaattacaaaaaaattccaactcagaaatttggcacatctgagtaggtga 444
Query: 244 attacaaaaggcttcaaaacgtaaccaaggaattattgggtaaatagaaaataggataaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attacaaaaggcttcaaaacgtaaccaaggaattattgggtaaatagaaaataggataaa 504
Query: 304 atgtttctacaggctctagtgataagctctgcagggttacaggtaaccacttgtgaatca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgtttctacaggctctagtgataagctctgcagggttacaggtaaccacttgtgaatca 564
Query: 364 atatttcccctgataacttggtgtcagaaaaatgacaaagacatgttccatatatctgtt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atatttcccctgataacttggtgtcagaaaaatgacaaagacatgttccatatatctgtt 624
Query: 424 tctccctttttataccttagcttttctattgtatttctcttattgcaactcgttgacaca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctccctttttataccttagcttttctattgtatttctcttattgcaactcgttgacaca 684
Query: 484 tcttctcagatggactcttgactgaatccaaaatttatacttggactatacgtcatcaaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcttctcagatggactcttgactgaatccaaaatttatacttggactatacgtcatcaaa 744
Query: 544 aaaaaaa-tactgaggctcccatcctttgactagaagag 581
||||||| |||||||||||||||||||||||||||||||
Sbjct: 745 aaaaaaaatactgaggctcccatcctttgactagaagag 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 983
Length adjustment: 10
Effective length of query: 571
Effective length of database: 973
Effective search space: 555583
Effective search space used: 555583
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_l03.g1 MSMg01no544_l03.g1 CHROMAT_FILE:
MSMg01no544_l03.g1 PHD_FILE: MSMg01no544_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:27 2005
(678 letters)
>mm_chr5_90349872_90350948
Length = 1077
Score = 1249 bits (646), Expect = 0.0
Identities = 670/678 (98%), Gaps = 1/678 (0%)
Strand = Plus / Minus
Query: 1 catcaagcatcgtggtagtatagggttacctggggtcaaaactttgggccttgccagatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 catcaagcatcgtggtagtatagggttacctggggtcaaaactttgggccttgccagatt 818
Query: 61 agcccaggaaaaccagaaccagtatcaggtccagtccacaagcagagagctagccaaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 agcccaggaaaaccagaaccagtatcaggtccagtccacaagcagagagctagccaaagt 758
Query: 121 caagaactggaacactgtcagagactgaacaggatgatgccagaggaacagccaagagaa 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 caagaactggaacattgtcagagactgaacaggatgatgccagaggaacagccaagagaa 698
Query: 181 caattcaagggtagtacatagagcaaacagcagaggtaacaggagacaaggacagaggca 240
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 697 caatccaagggtagtacatagagcaaacagcagaggtaataggagacaaggacagaggca 638
Query: 241 ggtcccagcgatcacagctgcttctgcacagggcctctgtagaatgacagtgcctcattt 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 637 ggtcccagcgatcacagctgcttctgcacagggcctctgtagagtgacagtgcctcattt 578
Query: 301 catctctaagcacaagctcactgtagagccttaaaggttcatttctatgtctgatgtcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 catctctaagcacaagctcactgtagagccttaaaggttcatttctatgtctgatgtcac 518
Query: 361 aaaaaactcagtatagtctacccctaagaatacagagtgtgggtatagaaatacaaacac 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 -aaaaactcagtatagtctacccctaagaatacagagtgtgggtatagaaatacaaacac 459
Query: 421 gtgaacttctgagctactgtgattgttagcagccgtcttggtccatttcttagattcatg 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gtggacttctgagctactgtgattgttagcagccgtcttggtccatttcttagattcatg 399
Query: 481 tctgtctatgttccttagccactactatgacccagcagagtgaccattggagcctggaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tctgtctatgttccttagccactactatgacccagcagagtgaccattggagcctggaaa 339
Query: 541 atatgatcatgtccctagtctattgttttggaattgagagaaatgtagagtccaaagttt 600
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 338 atatgatcatgtccctagtctattgttttggaattgagagaaatgtagattccaaagttt 279
Query: 601 tatagaccagggtgttggggaacagtgtgttcatctcaagactggaagaatgtctagaac 660
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 278 tatagaccagggtgttggggaacagtgtgttcatctcaagcctggaagaatgtctagaac 219
Query: 661 tttgctactgaaatctca 678
||||||||||||||||||
Sbjct: 218 tttgctactgaaatctca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1077
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1067
Effective search space: 712756
Effective search space used: 712756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
