Query= MSMg01no544_l18.b1 MSMg01no544_l18.b1 CHROMAT_FILE:
MSMg01no544_l18.b1 PHD_FILE: MSMg01no544_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:30 2005
(635 letters)
>mm_chr5_118954918_118955952
Length = 1035
Score = 1064 bits (550), Expect = 0.0
Identities = 568/574 (98%)
Strand = Plus / Minus
Query: 59 cctcctgagttctggggttaaaggtatgagacaccactgcccagctcactggccctgatt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 cctcctgagttctggggttaaaggtatgagacaccactgcccagctcactggccctgatt 976
Query: 119 ttgaactaaaagagaagttgaactgacctttcttgtccatagctcccagatgccagtatc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 ttgaactaaaagagaagttgaactgacctttcttgtccatagctcccagatgccagtatc 916
Query: 179 acaggtgtgccgggctggagagcaagcccatgactttctgcataccaggcaaggactttt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 acaggtgtgccgggctggagagcaagcccatgactttctgcataccaggcaaggactttt 856
Query: 239 ccaaacgagctacatttccaacctgtaaaccaggctagtagcattgggtgtcattgaatg 298
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ccaaccgagctacatttccaacctgtaaaccaggctagtagcattgggtgtcattgaatg 796
Query: 299 acaggacatctgaattgggggtcgactttagagtgtcatcctctgtcatctccccagcat 358
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 795 acaggacatctgaattgggggtcgactttagaatgtcatcctctgtcatctccccagcat 736
Query: 359 atttgtcgctgatggaaagaaggtatgagacaaaaagtagccaacgtaggaagataggaa 418
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 735 atttgtcgctgatggaaagaaggtatgagacaaaaagtagccaacataggaagacaggaa 676
Query: 419 gcaggtggctctcctctgctgctatcaaaagcaaagcaggcatggtaggccctatcccaa 478
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 675 gcaggtggctctcctctgctgctatcaaaagcaaagcaggcatggtaggtcctatcccaa 616
Query: 479 aagatttaaattcaaacatatagacatttatgaacagcccagttcctgacatgcctcatg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aagatttaaattcaaacatatagacatttatgaacagcccagttcctgacatgcctcatg 556
Query: 539 ccgaggttctccctaaacccagtgataataggatacagtctgatagcgtggtgtccctgg 598
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 555 ccgaggttctccctaaacccagggataataggatacagtctgatagcgtggtgtccctgg 496
Query: 599 ggacacctggggactccacagtgactacagagca 632
||||||||||||||||||||||||||||||||||
Sbjct: 495 ggacacctggggactccacagtgactacagagca 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_l18.g1 MSMg01no544_l18.g1 CHROMAT_FILE:
MSMg01no544_l18.g1 PHD_FILE: MSMg01no544_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:30 2005
(603 letters)
>mm_chr5_118790589_118791587
Length = 999
Score = 1060 bits (548), Expect = 0.0
Identities = 588/604 (97%), Gaps = 6/604 (0%)
Strand = Plus / Plus
Query: 1 caactccaggttctgtgtctctgagtgctgacctcagtccttccaaccgcaggtggcatt 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 caactccaggttctgtgtctctgagtgctgacctcagttcttccaaccgcaggtggcatt 260
Query: 61 tctgccacttgagagaaaagatgggaactggaaacgctttgttcaaagcttcccctgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tctgccacttgagagaaaagatgggaactggaaacgctttgttcaaagcttcctctgtat 320
Query: 121 taaatgtgtgtttgtttaaccaatatttacaaagcagcgaataagacagtgtctctccgc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 taaatgtgtgtttgtttaaccaatatttacaaagcagcgaataagacagtgtctttccgc 380
Query: 181 gcatccggcaggcagacttacatacgtgtcagagacacatgtccaaagatgttctttagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatccggcaggcagacttacatacgtgtcagagacacatgtccaaagatgttctttagc 440
Query: 241 ccataagactggaagaaacttgaattttcaacgatgggggctaggtaagtaagtcatata 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ccataagactggaagaaacttgaattttcaaagatgggggctaggtaagtaagtcatata 500
Query: 301 ccatagtgcccacacagacct-tgggagttataaaattatgtcacagcctggcttggtgg 359
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccatagtgcccacac-----tatgggagttataaaattatgtcacagcctggcttggtgg 555
Query: 360 cacatgcgtttagtcccagcacttaggaggcagaggcaggtggatctgtgtgagttcgag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cacatgcgtttagtcccagcacttaggaggcagaggcaggtggatctgtgtgagttcgag 615
Query: 420 gccaacctgatccacaaagtgggttcaggacagccaaggctatcatacagagaaaccctg 479
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 616 gccaacctgattcacaaagtgggtccaggacagccaaggctatcatacagagaaaccctg 675
Query: 480 tctcaaaagcaaagcaaagcaaaacaaaacaaaacaaaaaccacacatcccccgttccca 539
|||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 676 tctcaaaaacaaagcaaaacaaaacaaaacaaaacaaaaaccacacctcccccgttccca 735
Query: 540 aaaaagaatgcttcacataaaagtatgtcagatgtgctcgcctgagtggcctgctattcc 599
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 736 aaaaagaatgcttcacataaaagtatgtcagatgtgctcacctgagtggcctgctattcc 795
Query: 600 taaa 603
||||
Sbjct: 796 taaa 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 999
Length adjustment: 10
Effective length of query: 593
Effective length of database: 989
Effective search space: 586477
Effective search space used: 586477
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
