Query= MSMg01no544_o03.b1 MSMg01no544_o03.b1 CHROMAT_FILE:
MSMg01no544_o03.b1 PHD_FILE: MSMg01no544_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:42 2005
(582 letters)
>mm_chr5_82310677_82311658
Length = 982
Score = 1011 bits (523), Expect = 0.0
Identities = 562/575 (97%)
Strand = Plus / Minus
Query: 8 gaattcactcttgttaactggatcttaagtccaatgacagagtggttggtcacccctata 67
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gaattcactcttatgaaatggatcttaagtccaatgacagagtggttggtcacccctata 794
Query: 68 acaggtgtgcctgtagtgttcaagtgattgtagtgtttttcttacctgttatatagatat 127
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 793 acagttgtgcctgtagtgttcaaatgattgtagtgtttttcttacctgttatatagatat 734
Query: 128 aatctctaacagaaacatgaatgtcaaaggtactttggcactatgaatttttccaatgta 187
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 733 aatctctaacagaaacatgaatgtcaaaggtactttggcactatggatttttccaatgta 674
Query: 188 gcttgaaatgagaaattgccattttgttgatgttgattgtgattgtgttttagagcaaaa 247
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gcttgaaatgagaaatttccattttgttgatgttgattgtgattgtgttttagagcaaaa 614
Query: 248 aaattgtattttacctttttaagttaaaataaattcttgaaaatagtcaaagttagctat 307
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 613 aaattgtattttacctatttaagttaaaataaattcttgaaaaaagtcaaagttagctat 554
Query: 308 tgagttaccattttataaacttctgtcggtgtgtagatatgtgatttgaagaatttcaat 367
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 553 tgagttaccattttataaacttctgtctgtgtgtagatatgtgatttgaagaatttcaat 494
Query: 368 ctaaaaaattatattttccctcccaagagcagttaactctgtcttctaacttgaggttgt 427
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 493 ctaaaaaattatattttccctcccaagagtggttaactctgtcttctaacttgaggttgt 434
Query: 428 tttataagtttttaccttggagaatgattgaatattaaaatttttatgaatattgatact 487
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 433 tttataagtttttaccttggagaatgattgaacattaaaatttttatgaatattgatact 374
Query: 488 ttgttgatttctaaaactctggtctggactaattcagagatatatgttgacaattccatt 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttgttgatttctaaaactctggtctggactaattcagagatatatgttgacaattccatt 314
Query: 548 tacaaccttcatcctttcctgtaatgtttgtataa 582
|||||||||||||||||||||||||||||||||||
Sbjct: 313 tacaaccttcatcctttcctgtaatgtttgtataa 279
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_o03.g1 MSMg01no544_o03.g1 CHROMAT_FILE:
MSMg01no544_o03.g1 PHD_FILE: MSMg01no544_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:42 2005
(668 letters)
>mm_chr5_82159027_82160096
Length = 1070
Score = 1170 bits (605), Expect = 0.0
Identities = 654/672 (97%), Gaps = 4/672 (0%)
Strand = Plus / Plus
Query: 1 attgaaccaaatttctgcctaggatcattttgttcattaaagattaaagtattataaagg 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgaaccaaatttctgcctagggtcattttgttcattaaagattaaagtattataaagg 260
Query: 61 agctattattttgataatggctgacatgaatgtgtcgtatttccatttggacttaattaa 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 agctattattttgataatggctgacatgaatgtgtcatatttccatttggacttaattaa 320
Query: 121 gatatcttcttaaataaaattaaaatgaatgaatttaattagttaattttgttggtggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatatcttcttaaataaaattaaaatgaatgaatttaattagttaattttgttggtggtt 380
Query: 181 ctgagattaaacttggcttgctgcatacgaagcaaccaccctatcactgagctatatccc 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgagattgaacttggcttgctgcatacgaagcaaccaccctatcactgagctatatccc 440
Query: 241 tagccagggcattggattttgactacagttttaggctttctgcattctgtaacttggtat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagccagggcattggattttgactacagttttaggctttctgcattctgtaacttggtat 500
Query: 301 gtactgttttctatcttcatggttcctgtaattgttcactgctgcttttactttattcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtactgttttctatcttcatggttcctgtaattgttcactgctgcttttactttattcca 560
Query: 361 gatatatata--cattttatttattccatctcattttccctgacttgctaactatgtaac 418
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 561 tatatatatatacattttatttattccatctcattttctctaacttgctaactatgtaac 620
Query: 419 tttattttctttattggggaatgttgcagcaaaagaaaattttggaagatatcagaaaaa 478
|||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 621 tttattttctttattgggtaatgttgcagcaaaacaaaatttcggaagatatcagaaaaa 680
Query: 479 cttcagttaagagattcttgtaagggctggagaggtggctgagaggtttagagcactgac 538
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 cttcagttaagagattcttgtaagggatggagaggtggctgagaggtttagagcactgac 740
Query: 539 tgttcttccagaggacccagattcagttcccagtgtccacgtggcagctcccaactgtct 598
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 741 tgttcttccagaggacccagattcagttcccagtgtccacatggcagctcacaactgtct 800
Query: 599 gtagctcanattcctgtggatccaactccctcactcac--gtatatgtaggccaaacata 656
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 801 gtagctcaaattcctgtggatccaactccctcactcagatgtatatgtaggccaaacata 860
Query: 657 aatgtacattca 668
||||||||||||
Sbjct: 861 aatgtacattca 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1070
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1060
Effective search space: 697480
Effective search space used: 697480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
