BAC Information

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BAC

Clone NameMSMg01-545B19
Chromosome5 (Build37)
Map Location 51,271,490 - 51,271,859
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666223, Gpr125, EG637307, LOC100041015, LOC242987
Downstream geneEG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545B19.T7 (MSMg01no545_b19.b1)MSMg01-545B19.TJ (MSMg01no545_b19.g1)
ACCAG610252AG610253
length748743
length of high quality
(start - end)
664 (34 - 697)510 (64 - 573)
definitionCHROMAT_FILE: MSMg01no545_b19.b1 PHD_FILE: MSMg01no545_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:00 2005CHROMAT_FILE: MSMg01no545_b19.g1 PHD_FILE: MSMg01no545_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTGGAA
GAAGGAGAGGAAGAATTTTAAGAGCCAGAGAGGTGAAGGACACCACAAGA
ATCAACCGACCGGGACCCATAGTGGCTCAATGGGACTAATCTGATCATCA
GGGAGCCTGCATGGGTCTGATCTGGGCATTCAGCATATATGTTATGGTTG
TTTAGCGTGGTGTTCTTATGGGACTCCCAACAGTGGGAAGGGGAAGTATC
TTTGAATCTTTGCCTACTTTGGGACCCTTTAGTTCCTACTGAGCTGGCCC
ATTCAGTCTTACTATGAGGGGATGTGCCTAGTCTCATTGCAACTTGATAT
GTTATGTTTAGTTGAGGCCTGTCCTTTTCTGAGGAAAAACAAAGGAAACA
TGGATCTGGAAAAGGGAGGTGGGGTAGGAGTGTCAGAAAAGAGGAAGAAG
AAACTGTAATCAAGGTGTAATATTTGAGAAAAAATAAATTTCAAAAGTTG
TATCATGTTTTTTTGTATGAATATATGGTGGTTTGTTAGTCCATTTACCA
GGTGATGAAAGTTTGATGGATTTGCATGTTTGGAACTATTATGAATAAAG
ATATTCTACACAATTTCAATGCAGATATTTTGTAGACAAATACTTTGTTT
CTTGCGATAGGACAACAAAGTTATGTGATAAATAATGTATACAGCAGTAC
AAAGTGTTTTTCTAAAGTGTGTGTATCACTTTAGGTGGTGCTTCATTT
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATAAATCTGAAACAATACTATGTTGTTTAAAGCCACT
ACATTTTTGGTCTTCTATTATGTTAAAAATGCAACTCTGCTTAGACATGC
TAGATAATTACAAGAAGACTAAGGAAGGAATCTCTTGACTGTTGCACTTG
ATTTTCTCCAGTGGCATTTCTTTTCTTTTCTTTTTTTTTTTTTAATATTT
TTTATTATGTATTTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTCC
CCCACACCCTTCCCCCCACTCCCCTACCCACCCATTCCCACTTTTTGGCC
CTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCATGTCCAATGGGCC
TCTCTTTCCAGTGATGGCCAACTAGGCCATCTTTTGATACATATGCAGCT
AGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTGCACCTA
CAGGGTTGCAGATCTCTTTAGCTCCTTGGATACTCTCTAGCTCCAATATA
TAGTTATGGCATTTAATGGCGTATATGAGTTAGTGTGCTTTTGTACTGTT
AATAACATGTGACTGCCATCAGAGACAGCTTCCCTAAACAATTCCTCTCA
GTAGTATATTTATATTGTATGTTCTTCTACCTAATTTCCCTTCTGTTTTC
TCATAGCTCAAGCACTACAGGCATGATCTGGGCATCTGGGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_b19.g1 MSMg01no545_b19.g1 CHROMAT_FILE:
MSMg01no545_b19.g1 PHD_FILE: MSMg01no545_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:00 2005
         (510 letters)



>mm_chr5_51271490_51272399
          Length = 910

 Score =  658 bits (340), Expect = 0.0
 Identities = 364/374 (97%), Gaps = 4/374 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaatctgaaacaatactatgttgtttaaagccactacatttttggtcttctattatgt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 370 ataaatctgaaacaatactatgttgtttgaagccactacatttttggtcttctattatgt 311

                                                                       
Query: 61  taaaaatgcaactctgcttagacatgctagataattacaagaagactaaggaaggaatct 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 taaaaatgcagctctgcttagacatgctagataattacaagaagactaaggaaggaatct 251

                                                                       
Query: 121 cttgactgttgcacttgattttctccagtggcatttcttttcttttcttttttttttttt 180
           |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||
Sbjct: 250 cttgactgttgcacttgattttctccagtggcatttcttttcttttc----ttttttttt 195

                                                                       
Query: 181 aatattttttattatgtattttcctcaattacatttccaatgctatcccaaaagtccccc 240
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aatattttttattacatattttcctcaattacatttccaatgctatcccaaaagtccccc 135

                                                                       
Query: 241 acacccttccccccactcccctacccacccattcccactttttggccctggcattcccct 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 134 acacccttccccccactcccctacccacccattcccactttttggccctggcgttcccct 75

                                                                       
Query: 301 gtactggggcatataaagtttgcatgtccaatgggcctctctttccagtgatggccaact 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 74  gtactggggcatataaagtttgcatgtccaatgggcctctctttccagtgatggccgact 15

                         
Query: 361 aggccatcttttga 374
           ||||||||||||||
Sbjct: 14  aggccatcttttga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)