Query= MSMg01no545_b20.b1 MSMg01no545_b20.b1 CHROMAT_FILE:
MSMg01no545_b20.b1 PHD_FILE: MSMg01no545_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:00 2005
(709 letters)
>mm_chr5_7482533_7483641
Length = 1109
Score = 1027 bits (531), Expect = 0.0
Identities = 540/543 (99%)
Strand = Plus / Minus
Query: 4 ggaattctgtgtgttaacccaagttttacaaatagactgtccttttatctatctttatta 63
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 543 ggaattctgtgtgttaacccaagctttacaaatagactgtccttttatctatctttatta 484
Query: 64 ggtaaatgtaaattcaaactgaagatgacagctcacctctcactgaaggaattatcctga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ggtaaatgtaaattcaaactgaagatgacagctcacctctcactgaaggaattatcctga 424
Query: 124 ctgtctccctttacctcccaatctttcatttcaacatgcagaaagtaggatctgatttct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctgtctccctttacctcccaatctttcatttcaacatgcagaaagtaggatctgatttct 364
Query: 184 tatccattactaactgtccatgtgcaatatgcattatagtagcttcagacgtgttaattg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tatccattactaactgtccatgtgcaatatgcattatagtagcttcagacgtgttaattg 304
Query: 244 tgctcttgtgaaatgccaaaggggtccatcggctacagcacagcctgtatgctctgtccc 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 303 tgctcttgtgaaatgccaaaggggtccatcagctacagcacagcctgtatgctctgtccc 244
Query: 304 tttattttcctttcagtgactctgtgtctagagttcagagaacaccatttttcctattct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tttattttcctttcagtgactctgtgtctagagttcagagaacaccatttttcctattct 184
Query: 364 tcttcaatgagcttgattgtttccaggtccttttgtcactctgtattctattttgaactc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tcttcaatgagcttgattgtttccaggtccttttgtcactctgtattctattttgaactc 124
Query: 424 cactgttatcctaagtgaatagttttagttattaaggttcattctttatgctggaaagtt 483
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cactgttatcttaagtgaatagttttagttattaaggttcattctttatgctggaaagtt 64
Query: 484 gtatggtattgatgcatgtttaatgtcaatagagtgttataaaatggtttcagtaaaccg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 gtatggtattgatgcatgtttaatgtcaatagagtgttataaaatggtttcagtaaaccg 4
Query: 544 ctg 546
|||
Sbjct: 3 ctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space: 768201
Effective search space used: 768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no545_b20.g1 MSMg01no545_b20.g1 CHROMAT_FILE:
MSMg01no545_b20.g1 PHD_FILE: MSMg01no545_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:00 2005
(593 letters)
>mm_chr5_7331573_7332569
Length = 997
Score = 1058 bits (547), Expect = 0.0
Identities = 583/597 (97%), Gaps = 4/597 (0%)
Strand = Plus / Plus
Query: 1 cagtaagcatatcctccagagtaaatgatgccaatgtgctgcagaaatgcagctcagggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtaagcatatcctccagagtaaatgatgccaatgtgctgcagaaatgcagctcagggt 260
Query: 61 attctgtacgaatgtattaacatcaacatgtttgtatccaccatcatctactttttaaca 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 attctgtacgaatgtattaacatcaacatgtttctatccaccatcatctactttttaaca 320
Query: 121 tactctagagaaacgactctattaatttcaggtaccctgtacatcctaatgatcacagag 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactctagagaaatgactctattaatttcaggtaccctgtacatcctaatgatcacagag 380
Query: 181 aatagaaggaacgtaacacttaaaattcatagcagagtggccactcaccaattggaagga 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 aatagaaggaacgtaacacttaaaattcacagcagagtggccactcaccaattggaagga 440
Query: 241 aacctatgatggcttattactttttacttttattactttccttttataacatagttcctc 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 aacctatgatggcttattactttttatttttattactttccttttataacatagttcctc 500
Query: 301 aaatcttacttctatgataacaacaaaaaaaaaga----gcgagtcattaatgtaactgt 356
||||||||||||||||||||||| ||||||||| | || ||||||||||||| ||||
Sbjct: 501 aaatcttacttctatgataacaaaaaaaaaaaaaaaaaagcaagtcattaatgtacctgt 560
Query: 357 caccaaggtctctcccagcagccttgcctagaacttgtgaatttacacgacctggatatg 416
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 caccaaggtctctcccagcagccttgcctagaacttgtgaatttacacgaccaggatatg 620
Query: 417 ggtagccagacaagaatattacattggctttaggatgctttatcttacttttctgctgct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtagccagacaagaatattacattggctttaggatgctttatcttacttttctgctgct 680
Query: 477 ccaacagaatttaaactgagttattttgaaggatattctctcctgccagcctagtcattg 536
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccatcagaatttaaactgagttattttgaaggatattctctcctgccagcctagtcattg 740
Query: 537 ttgtggctcataaacttttaaagttaagtaggactactgattgttccacttttatcg 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgtggctcataaacttttaaagttaagtaggactactgattgttccacttttatcg 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 997
Length adjustment: 10
Effective length of query: 583
Effective length of database: 987
Effective search space: 575421
Effective search space used: 575421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
