BAC Information

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BAC

Clone NameMSMg01-545C09
Chromosome5 (Build37)
Map Location 91,642,616 - 91,822,620
singlet/doubletdoublet
Overlap geneBtc
Upstream geneCox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg
Downstream gene9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545C09.T7 (MSMg01no545_c09.b1)MSMg01-545C09.TJ (MSMg01no545_c09.g1)
ACCAG610279AG610280
length722728
length of high quality
(start - end)
667 (56 - 722)570 (65 - 634)
definitionCHROMAT_FILE: MSMg01no545_c09.b1 PHD_FILE: MSMg01no545_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:03 2005CHROMAT_FILE: MSMg01no545_c09.g1 PHD_FILE: MSMg01no545_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,822,105 - 91,822,620)(91,642,616 - 91,643,185)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
AAATAGCTTCCTCCTTAGGAAGCGGAGCCAGGTGATTTTGTAATTTAGAT
AAAGTCATGCTTTTAGTGACAAGTGAAACTTTGAAATATTTTATGGTTTC
TCAAATGGTCAATTGGTTTAAACACAGAGGAAAAGTTCACTCTGCCTTTT
GCCTTACTCACTACTGCTCGGTGATGGGTTGACTTACATTAATCAAAGGT
CTGGGTCAATAGTCAGACCCATGGTTCTTTTCTTTGTTTTATGTTTTTAG
ACAAGGTCTCATTATAGAACTCAGGCTGGTCTTGAACTCATAATCTTCCT
ACCTCAGCCTCCTGAATGTTGAGATGGCAGGTATACACCACGATGTCTGA
CTTCTTTGGTCCCTAATCACTCACTGCTAGGCTTTATAAACTTGGAGATT
ATCACCACTAGAAAATAGCACAGGTTCATCTTGTGGTAACAACAGAATCT
TTTGAGAGAGACTAATATTTTAATAATTAATAGGGTTAAATTTTTTAATG
ATTATGATGTAATGACATGTTTAAGAAAATTGATTCATGCTCCTGAGAGA
GAGGAAACCAAAACAAGTGTTTTATTCTTTATCTTCCAAGTTCCACCTAT
TGTATGGAGGTTCTATAACATCAAGGGAGACGTTGTTTTTTCTTTAACTC
ATGTCCGCTGGCCTTCTCAGGG
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATATCCATGCTATGGCTCTGGGGTTATCTACTGAAG
ACTGACTTGGTTAGCTTTCCCAGGTATCCATATTCATGTTTGTCAACTAA
CTTCGAAGGTAGGTGACAGAACAGACAAAGTAAGAAAGACATGAACTTAA
GTAGGGCAATGACCATGTGAAAGGAAGGCTAGCTTCATACAACATTTACT
GTATCTGGAATCCTGTGTAATGACAGTTTAGAGATCTGGGAAAGCCCTGC
CTATTCCACATTCTGACGCCAAACTAGACATATTGTTTGGAAGGCTAACC
TGTGGATGTCATTGTTTTTGGATTAAAACTTGCCTTCTTGAATATCTTAT
TCTCTTATTTGTTGTCAGTGACAACTGACAACAAGTTAATTTACTATGCT
TTTTGAGCTGCACAGGAGAATGAAGGATTTATAAAGGATGTGCTGAAGGA
GGGGAAGAACTGTAGACAACACATTTGCTTCCTAGTTCCCCATAATTTCT
CTATAATTAAGCCTTATAATTTTCCCCGANGTTGATGCTGAAAGATAAAG
GGAGGAAGCACGAGATTTAACGAAATATGAAGAATGCTTATAAGTTTTGA
GGGCTGTGTATAACACAGCACTAAACATATTCTACTTACCATTTAATTTT
CAAAATAATTGTATGAAGATTAACTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_c09.b1 MSMg01no545_c09.b1 CHROMAT_FILE:
MSMg01no545_c09.b1 PHD_FILE: MSMg01no545_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:03 2005
         (667 letters)



>mm_chr5_91821558_91822624
          Length = 1067

 Score =  998 bits (516), Expect = 0.0
 Identities = 516/516 (100%)
 Strand = Plus / Minus

                                                                        
Query: 152  ctcactactgctcggtgatgggttgacttacattaatcaaaggtctgggtcaatagtcag 211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 ctcactactgctcggtgatgggttgacttacattaatcaaaggtctgggtcaatagtcag 1004

                                                                        
Query: 212  acccatggttcttttctttgttttatgtttttagacaaggtctcattatagaactcaggc 271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 acccatggttcttttctttgttttatgtttttagacaaggtctcattatagaactcaggc 944

                                                                        
Query: 272  tggtcttgaactcataatcttcctacctcagcctcctgaatgttgagatggcaggtatac 331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943  tggtcttgaactcataatcttcctacctcagcctcctgaatgttgagatggcaggtatac 884

                                                                        
Query: 332  accacgatgtctgacttctttggtccctaatcactcactgctaggctttataaacttgga 391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883  accacgatgtctgacttctttggtccctaatcactcactgctaggctttataaacttgga 824

                                                                        
Query: 392  gattatcaccactagaaaatagcacaggttcatcttgtggtaacaacagaatcttttgag 451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823  gattatcaccactagaaaatagcacaggttcatcttgtggtaacaacagaatcttttgag 764

                                                                        
Query: 452  agagactaatattttaataattaatagggttaaattttttaatgattatgatgtaatgac 511
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763  agagactaatattttaataattaatagggttaaattttttaatgattatgatgtaatgac 704

                                                                        
Query: 512  atgtttaagaaaattgattcatgctcctgagagagaggaaaccaaaacaagtgttttatt 571
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703  atgtttaagaaaattgattcatgctcctgagagagaggaaaccaaaacaagtgttttatt 644

                                                                        
Query: 572  ctttatcttccaagttccacctattgtatggaggttctataacatcaagggagacgttgt 631
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643  ctttatcttccaagttccacctattgtatggaggttctataacatcaagggagacgttgt 584

                                                
Query: 632  tttttctttaactcatgtccgctggccttctcaggg 667
            ||||||||||||||||||||||||||||||||||||
Sbjct: 583  tttttctttaactcatgtccgctggccttctcaggg 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no545_c09.g1 MSMg01no545_c09.g1 CHROMAT_FILE:
MSMg01no545_c09.g1 PHD_FILE: MSMg01no545_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:03 2005
         (570 letters)



>mm_chr5_91642416_91643385
          Length = 970

 Score = 1050 bits (543), Expect = 0.0
 Identities = 563/570 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatccatgctatggctctggggttatctactgaagactgacttggttagctttcccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatccatgctatggctctggggttatctactgaagactgacttggttagctttcccagg 260

                                                                       
Query: 61  tatccatattcatgtttgtcaactaacttcgaaggtaggtgacagaacagacaaagtaag 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatccaaattcatgtttgtcaactaacttcgaaggtaggtgacagaacagacaaagtaag 320

                                                                       
Query: 121 aaagacatgaacttaagtagggcaatgaccatgtgaaaggaaggctagcttcatacaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagacatgaacttaagtagggcaatgaccatgtgaaaggaaggctagcttcatacaaca 380

                                                                       
Query: 181 tttactgtatctggaatcctgtgtaatgacagtttagagatctgggaaagccctgcctat 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 tttactgtatctggaatcctgtgtaatgacagtttggagatctgggaaagccctgcctat 440

                                                                       
Query: 241 tccacattctgacgccaaactagacatattgtttggaaggctaacctgtggatgtcattg 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tccacattctgacgccaaactagacatactgtttggaaggctaacctgtggatgtcattg 500

                                                                       
Query: 301 tttttggattaaaacttgccttcttgaatatcttattctcttatttgttgtcagtgacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttttggattaaaacttgccttcttgaatatcttattctcttatttgttgtcagtgacaa 560

                                                                       
Query: 361 ctgacaacaagttaatttactatgctttttgagctgcacaggagaatgaaggatttataa 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 ctgacaacaagttaatttactatgctttttgagctgcacaggagaatgaaagatttataa 620

                                                                       
Query: 421 aggatgtgctgaaggaggggaagaactgtagacaacacatttgcttcctagttccccata 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cggatgtgctgaaggaggggaagaactgtagacaacacatttgcttcctagttccccata 680

                                                                       
Query: 481 atttctctataattaagccttataattttccccgangttgatgctgaaagataaagggag 540
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 atttctctataattaagccttataattttccccgaagttgatgctgaaagataaagggag 740

                                         
Query: 541 gaagcacgagatttaacgaaatatgaagaa 570
           |||||| |||||||||||||||||||||||
Sbjct: 741 gaagcatgagatttaacgaaatatgaagaa 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)