BAC Information

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BAC

Clone NameMSMg01-545C10
Chromosome5 (Build37)
Map Location 83,835,150 - 83,835,663
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545C10.T7 (MSMg01no545_c10.b1)MSMg01-545C10.TJ (MSMg01no545_c10.g1)
ACCAG610281AG610282
length734733
length of high quality
(start - end)
701 (34 - 734)514 (68 - 581)
definitionCHROMAT_FILE: MSMg01no545_c10.b1 PHD_FILE: MSMg01no545_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:03 2005CHROMAT_FILE: MSMg01no545_c10.g1 PHD_FILE: MSMg01no545_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTC
AACTTTTCATCCAATTTCTTATGTGTCAGTATAACTTACAGTTTTGGGTT
TGTCTGTAGCTGTCTGTTGTACACTTCTCTATGTGACTGTCCGAAAGTCT
CATTCTCTGTCCTGGTTTGCATATTCCTAACAAAAGGTTTTTTCTCTATT
TTTTTTACAACACAAAAAGTACTACATGGGGTGGAAATGGACAATAGATT
ATACCATTATTGAATAGAATCTTATAGAATATGAAATTTCCTTGACTCCA
TTTTTCTGAGTGCTTCTGCGAAGAACTTGAAAGAGCAAACATGACAAGGA
AAAACCAATGCACTGGCCTTTGTTTATAAGAAGTACTATCAATAGTAGTT
TCTGCCACTTAGGATGGATATTTATTTATATCCACTCTTCATCAGTTTGT
TGCTTTCAGAAAATGAGTACTATAACACACAAAACGTACATATAGCAGTC
CAGGTAGGTCATGAAAGAGTCAAAATTACAAGTATGCATTATCATACCTT
GTAAAATGGAATTTCATCAGATATCCAGGCTAGCAAGTCTGGTTGTTTAT
AATATTGTTCTCCCCTAATGGCTGGTTAGCAACTAGGATGAGAGTATCAG
ATGGAGGAAGGACATAAGCCTTAAGTTTCAATGGCCATAAGATATATCAT
TTACTTCACTGTGAAGTCCATCAAACACTCCAGC
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAATAGAG
TTATTTGGTTCTCTGGAGTCTAACTTCTTGAGTTCTTTGTATATTTTTGA
TATTAGCTCTCTATCAGATGTAGGGTTGGTAAGGATCTTTCCCCAATCTG
TAGTTTGCTGTTTTGTACTATTGACAGTGTCCTTTGCCTACAGAAGCTTT
TCAATTTTATGACATGCCATTTGTCAATAGTTGATCTTAAACCATTGGTG
TTCTGTTCAGAAAACTGAAGATCATTGTTGAAAGAAATTAAGTCATAGTA
AACAACTTTTACTGGTTTAAGTTACTTTTATACACTTAAATTCTCGTAGA
TATATTTATTTTTATGAATATGAAAACATAAAACTTTATTATTAAAACCA
TGAAACTATCAAATAGCATATTCATTTGATTTGCTTAAAATATCAGTACT
GTAAAAGAAACAGCTAGCTGGGCAGTGGTGGTGCATGCTTTAATCCCAGC
ACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGTTCCAGCCTGGT
CTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAAAAAAACCCTGTCT
CGAAAAACAAATACAACAATTCAGAGATCCCGAACATACTAGCTAACGAA
AACAGCTAAGATTTAACAAAAGGAATTCATCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_c10.g1 MSMg01no545_c10.g1 CHROMAT_FILE:
MSMg01no545_c10.g1 PHD_FILE: MSMg01no545_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:03 2005
         (514 letters)



>mm_chr5_83834766_83835679
          Length = 914

 Score =  948 bits (490), Expect = 0.0
 Identities = 508/514 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttagctctgtaccccatttttaatagagttatttggttctctggagtctaacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 898 tttgtttagctctgtaccccatttttaatagagttatttggttctctggagtccaacttc 839

                                                                       
Query: 61  ttgagttctttgtatatttttgatattagctctctatcagatgtagggttggtaaggatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ttgagttctttgtatatttttgatattagctctctatcagatgtagggttggtaaggatc 779

                                                                       
Query: 121 tttccccaatctgtagtttgctgttttgtactattgacagtgtcctttgcctacagaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tttccccaatctgtagtttgctgttttgtactattgacagtgtcctttgcctacagaagc 719

                                                                       
Query: 181 ttttcaattttatgacatgccatttgtcaatagttgatcttaaaccattggtgttctgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ttttcaattttatgacatgccatttgtcaatagttgatcttaaaccattggtgttctgtt 659

                                                                       
Query: 241 cagaaaactgaagatcattgttgaaagaaattaagtcatagtaaacaacttttactggtt 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 658 cagaaaactgaagatcattgttgaaagaaattaagttatagtaaacaacttttactggtt 599

                                                                       
Query: 301 taagttacttttatacacttaaattctcgtagatatatttatttttatgaatatgaaaac 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 598 taagttacttttatacacttaaattctcatagatatatttatttttatgaatatgaaaac 539

                                                                       
Query: 361 ataaaactttattattaaaaccatgaaactatcaaatagcatattcatttgatttgctta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ataaaactttattattaaaaccatgaaactatcaaatagcatattcatttgatttgctta 479

                                                                       
Query: 421 aaatatcagtactgtaaaagaaacagctagctgggcagtggtggtgcatgctttaatccc 480
           ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 478 aaatatcagtattgtaaaagaaacagctagccgggcagtggtggtgcatgctttaatccc 419

                                             
Query: 481 agcacttgggaggcagaggcaggcggatttctga 514
           |||||||||| |||||||||||||||||||||||
Sbjct: 418 agcacttgggtggcagaggcaggcggatttctga 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)